Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00402 ATGTGTAAAGAGAAAGTAGGGGAAGAAGGCAACAAGAATTTGAGGGGAAGAAAGTCTTCATGGGCAACCCTCCGCCGTGTAGACTCGCTCAATCTGGAGGCCGGACGGGTTCCGGCCACCGCCACTCATCAACTATCCAGTGTACAAAATCTATTTAAAGTAACTTGGCGACGAACATTAAGTTTGGCATTTCAGAGTGTGGGAGTGGTGTACGGAGACATTGGAACATCACCGTTGTACGTGTTTGCGAGCACATTCAGCAACGGGACGATCGAGAACACAGACGACGTGATCGGAGTTCTATCGCTCATAATCTACACCATAGCATTGGTTCCATTGTTGAAGTATGTGTTCATTGTGTTGTGGGCAAATGACAATGGAGATGGTGGGACATTTGCTCTTTACTCACTGTTGTGTCGATATGTGAAAGTGGGATTGATTCCAAATGAACAACCAGAGGACAGGGAACTCTCTAATTATCAGCTTCTTATGCCTTCAAATTTGAGAAGGTCTCAGAAGGTGAAGGAGAAGCTTGAGAATAGTATGTTTGCAAAAGTTGCTCTGTTTCTTGTCACTATTGCTGGGACTTCCATGGTTATTGGAGATGGAGTTCTCACTCCATCTATCTCTGTGCTCTCAGCAGTGAGTGGAATCAAATCACTAGGAACAGATGCGGTTGTGGGGATTTCAATAGCTATTCTTGTAGTTCTGTTTAGCATTCAACGATTTGGAACAGACAAAGTGGGATTCTCATTTGCTCCAATAATATTTATTTGGTTTGCATTTATTGGTGGCATTGGCCTCTTCAACTTGTTCAAGCATGAACCTGCTGTTCTTAAAGCTTTTAACCCTAAATATATCATTGATTACTTCAAAAGAAATGGCAAACAAGCCTGGGTTTCTCTTGGTGGAGTTTTTCTTTGCATCACAGGGACTGAGGCCATGTTTGCTGATTTGGGTCACTTCAATGTCAGAGCCATCCAGATTAGTTTCTCTTCTATTGTATTCCCTGCTTTATTAGCAGCCTACAGTGGACAAGCTGCATATCTAAGAAAATTCCCCGACCATGTTGGCAATACTTTTTACGACTCAATTCCAGATCCTTTGTACTGGCCAACGTTCGTAGTTGCAGTGGCAGCTTCAATCATAGCAAGCCAAGCAATGATCTCAGGAGCATTTGCGATAATATCACAATCCTTGTCTTTAGGTTGTTTCCCAAGAGTAAAAGTTATTCACACTTCACCCAAATACGAAGGCCAAGTTTACATCCCAGAGATCAATTACCTTTTAATGTTGGCATGTGTCATCGTAACCACCGCCTTTAAAACCACCGAAAACATCGGTCACGCCTACGGTATTGCCGTCGTCTCCGTCATGATCATGACCACCGCCATGGTTTCTCTCATCATGGTCGTCATTTGGAAGACCAATATTTGGTTGATAGTTTTATTCATTCTCGTCTTTGGCTCTATTGAGCTTCTTTATTTCTCGTCGGTTCTTTATAAGTTCACTCAAGGCGGGTTTCTTCCTCTCGTTCTCGCTCTTTTCCTCATGGCTGTCATGATTGTTTGGCATTATGTTCATAGGGAAAGATACATATTTGAACTAAAAAATAAGGTCTCTAATGGTTACATAACAGAGCTAGCTAATAATCCTGATGTTAACCGAATTCCTGGAATTGGCCTTCTTTACTCTGAATTGGTTCAAGGTATTCCTCCCATTTTCCCTCATTTCATTTCTAGTATTCCTTCGGTCCACTCCGTCATCGTCTTCGTCTCCATCAAGTCCATTCCGATCAGCAAAGTCGCACCCGACGAGCGGTTTTTGTTTCGCCAAGTGGAGCCGAGGGAGTACCTCACTGGATCGGCTGAGTTTGAGCGGCAGTTGGTGGAGAGCTTAAAAGATTTCATACGCCAAGAACATGTAATGCTGGAAGGTGTTCCAATAGAACCAACAGTGCATGTGGAAGGTGGAACGACGATGGTATCAGCAGAAGCAGGGAACCAGTCGTCTCGACGCTCGTCGGGATCGATTCAGCCGGTCGAGGGTTCGAAATCGAGGGGGTCGGATCGTCAAGTACTAGGAATGGGTGCAGTGGAAGAAGAGATGGGATTTATAGAGAAAGCAATGAAGAAAGGGGTGGTTTATCTGTTGGGAGAAGCAGAGGTAGTGGCTGAACCAAAATCTTCATTGTTTAAGAAAATGGTGGTTAATTATGCTTATAGTTTCTTGAGGAAGAACTTTAGGCAAGGGGAGAATATTCTTGAGATTCCACACACTAGGCTTTTAAGGGTTGGAATGACTTATGAAATATGA 2316 43.44 MCKEKVGEEGNKNLRGRKSSWATLRRVDSLNLEAGRVPATATHQLSSVQNLFKVTWRRTLSLAFQSVGVVYGDIGTSPLYVFASTFSNGTIENTDDVIGVLSLIIYTIALVPLLKYVFIVLWANDNGDGGTFALYSLLCRYVKVGLIPNEQPEDRELSNYQLLMPSNLRRSQKVKEKLENSMFAKVALFLVTIAGTSMVIGDGVLTPSISVLSAVSGIKSLGTDAVVGISIAILVVLFSIQRFGTDKVGFSFAPIIFIWFAFIGGIGLFNLFKHEPAVLKAFNPKYIIDYFKRNGKQAWVSLGGVFLCITGTEAMFADLGHFNVRAIQISFSSIVFPALLAAYSGQAAYLRKFPDHVGNTFYDSIPDPLYWPTFVVAVAASIIASQAMISGAFAIISQSLSLGCFPRVKVIHTSPKYEGQVYIPEINYLLMLACVIVTTAFKTTENIGHAYGIAVVSVMIMTTAMVSLIMVVIWKTNIWLIVLFILVFGSIELLYFSSVLYKFTQGGFLPLVLALFLMAVMIVWHYVHRERYIFELKNKVSNGYITELANNPDVNRIPGIGLLYSELVQGIPPIFPHFISSIPSVHSVIVFVSIKSIPISKVAPDERFLFRQVEPREYLTGSAEFERQLVESLKDFIRQEHVMLEGVPIEPTVHVEGGTTMVSAEAGNQSSRRSSGSIQPVEGSKSRGSDRQVLGMGAVEEEMGFIEKAMKKGVVYLLGEAEVVAEPKSSLFKKMVVNYAYSFLRKNFRQGENILEIPHTRLLRVGMTYEI 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4328196 4344617 + Lsi07G004020.1 Lsi07g00402 666824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00402 771 MobiDBLite consensus disorder prediction 664 686 - -
Lsi07g00402 771 MobiDBLite consensus disorder prediction 664 691 - -
Lsi07g00402 771 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 770 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi07g00402 771 PANTHER POTASSIUM TRANSPORTER 5 14 770 - -
Lsi07g00402 771 Pfam K+ potassium transporter 63 616 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi07g00402 771 TIGRFAM kup: potassium uptake protein 62 771 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02375 Lsi-Chr2:30442129 Lsi07g00402 Lsi-Chr7:4328196 3.15E-168 dispersed
Lsi03g01051 Lsi-Chr3:20250539 Lsi07g00402 Lsi-Chr7:4328196 0 dispersed
Lsi07g00402 Lsi-Chr7:4328196 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi07g00402 Lsi-Chr7:4328196 Lsi02g02374 Lsi-Chr2:30419480 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00402 K03549 - csv:101205628 1283.09