Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00405 | ATGAAATTATTTGGTGTTATGGACACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGGACGCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGAAAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAAAGCTGCATCTCTTTCAGTGTTGATGATAATTGGGGCACTGAAGAAGGAAGCTTATCTAAATTAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTCTCACTTGCAAGAAAGACTGAAGGAACCGAAACACTGATTGGTTTGGCGGCTTCCACCGGCCTTGCGGTGATGGTCGTGATCTTGTCGACGGGCCATATCTCCGGAGCCCATCTGAACCCGGCTATCACTATTGCTTTTGCTGCATTGAAGCAGTTTCCATGGAAACACGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCTTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATCACCGCGGTCGCCACTGACACTCGGGCTGGAGATGACGTGGAATTAGAAATGCAGGTGGGAGAGTTGGCGGGAATCGCGGTAGGAGCAACAGTTATGCTCAATGTACTCATCGCCGGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATCGCGATTCACGATTGCCTTCTACTGCAGGAAGCTTTCGAAGATGA | 819 | 48.23 | MKLFGVMDTEEAPSTPVTPGTPGAPLFGRVKENQHGSENGKRSLLKSCISFSVDDNWGTEEGSLSKLVSSCSLPYPPVSLARKTEGTETLIGLAASTGLAVMVVILSTGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGYAQAFALEFIISFNLMFVITAVATDTRAGDDVELEMQVGELAGIAVGATVMLNVLIAGAIWIYLTAPILGTLCGAGIYTAVKLPDKDRDSRLPSTAGSFRR | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4368172 | 4374279 | + | Lsi07G004050.1 | Lsi07g00405 | 666827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00405 | 272 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lsi07g00405 | 272 | PANTHER | BNAA02G36290D PROTEIN | 12 | 83 | - | - | |
Lsi07g00405 | 272 | ProSitePatterns | MIP family signature. | 115 | 123 | IPR022357 | - | |
Lsi07g00405 | 272 | PANTHER | BNAA02G36290D PROTEIN | 82 | 229 | - | - | |
Lsi07g00405 | 272 | PRINTS | Major intrinsic protein family signature | 134 | 153 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi07g00405 | 272 | PRINTS | Major intrinsic protein family signature | 178 | 196 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi07g00405 | 272 | PRINTS | Major intrinsic protein family signature | 97 | 121 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi07g00405 | 272 | PRINTS | Major intrinsic protein family signature | 232 | 252 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi07g00405 | 272 | PANTHER | AQUAPORIN NIP2-1 | 12 | 83 | IPR034294 | - | |
Lsi07g00405 | 272 | PANTHER | AQUAPORIN NIP2-1 | 230 | 260 | IPR034294 | - | |
Lsi07g00405 | 272 | SUPERFAMILY | Aquaporin-like | 84 | 259 | IPR023271 | - | |
Lsi07g00405 | 272 | PANTHER | AQUAPORIN NIP2-1 | 82 | 229 | IPR034294 | - | |
Lsi07g00405 | 272 | Gene3D | Glycerol uptake facilitator protein. | 67 | 261 | IPR023271 | - | |
Lsi07g00405 | 272 | PANTHER | BNAA02G36290D PROTEIN | 230 | 260 | - | - | |
Lsi07g00405 | 272 | Pfam | Major intrinsic protein | 86 | 230 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00405 | Lsi-Chr7:4368172 | Lsi09g00101 | Lsi-Chr9:900849 | 2.13E-82 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00405 | K09874 | - | csv:101207376 | 456.062 |