Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00405 ATGAAATTATTTGGTGTTATGGACACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGGACGCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGAAAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAAAGCTGCATCTCTTTCAGTGTTGATGATAATTGGGGCACTGAAGAAGGAAGCTTATCTAAATTAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTCTCACTTGCAAGAAAGACTGAAGGAACCGAAACACTGATTGGTTTGGCGGCTTCCACCGGCCTTGCGGTGATGGTCGTGATCTTGTCGACGGGCCATATCTCCGGAGCCCATCTGAACCCGGCTATCACTATTGCTTTTGCTGCATTGAAGCAGTTTCCATGGAAACACGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCTTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATCACCGCGGTCGCCACTGACACTCGGGCTGGAGATGACGTGGAATTAGAAATGCAGGTGGGAGAGTTGGCGGGAATCGCGGTAGGAGCAACAGTTATGCTCAATGTACTCATCGCCGGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATCGCGATTCACGATTGCCTTCTACTGCAGGAAGCTTTCGAAGATGA 819 48.23 MKLFGVMDTEEAPSTPVTPGTPGAPLFGRVKENQHGSENGKRSLLKSCISFSVDDNWGTEEGSLSKLVSSCSLPYPPVSLARKTEGTETLIGLAASTGLAVMVVILSTGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGYAQAFALEFIISFNLMFVITAVATDTRAGDDVELEMQVGELAGIAVGATVMLNVLIAGAIWIYLTAPILGTLCGAGIYTAVKLPDKDRDSRLPSTAGSFRR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4368172 4374279 + Lsi07G004050.1 Lsi07g00405 666827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00405 272 MobiDBLite consensus disorder prediction 1 24 - -
Lsi07g00405 272 PANTHER BNAA02G36290D PROTEIN 12 83 - -
Lsi07g00405 272 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Lsi07g00405 272 PANTHER BNAA02G36290D PROTEIN 82 229 - -
Lsi07g00405 272 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi07g00405 272 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi07g00405 272 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi07g00405 272 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi07g00405 272 PANTHER AQUAPORIN NIP2-1 12 83 IPR034294 -
Lsi07g00405 272 PANTHER AQUAPORIN NIP2-1 230 260 IPR034294 -
Lsi07g00405 272 SUPERFAMILY Aquaporin-like 84 259 IPR023271 -
Lsi07g00405 272 PANTHER AQUAPORIN NIP2-1 82 229 IPR034294 -
Lsi07g00405 272 Gene3D Glycerol uptake facilitator protein. 67 261 IPR023271 -
Lsi07g00405 272 PANTHER BNAA02G36290D PROTEIN 230 260 - -
Lsi07g00405 272 Pfam Major intrinsic protein 86 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00405 Lsi-Chr7:4368172 Lsi09g00101 Lsi-Chr9:900849 2.13E-82 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00405 K09874 - csv:101207376 456.062