Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00408 ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCCAATTCCCAACTGGGTTTGGATCTCAGTCTTTCTAATAACGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAGGAACAGAACCTACAGATACAGAAACAGAGCCAAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGAGGACACCAAAATGCCCACAAGCGAGAAAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTTGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTTAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTCTTCATGTTTCTGCAATTGGGTCATCAGGAATTTATGGTCACAGTGGATGGTCGAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTCAGAGGTATTTCGTCGAACACTGGAGCTGCAAGGTTTGAGGGTGTGAAGAAATTCTCTCCGGCGGCAGTCACGGAGGCGCCACCGCCGCTCGGAGGTTTCTGGTGGGATAGCGGCGGCGGTGGCGGTGGTGGTGGTGGGGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 816 48.41 MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNNDSDHGSNPELNLIDCFDVNLGTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFEGVKKFSPAAVTEAPPPLGGFWWDSGGGGGGGGGGGFSHLKMKPKQDELLKLDLSLKL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4401433 4402248 + Lsi07G004080.1 Lsi07g00408 666830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00408 271 Gene3D Classic Zinc Finger 67 130 - -
Lsi07g00408 271 PANTHER ZINC FINGER PROTEIN 1-LIKE 1 271 - -
Lsi07g00408 271 MobiDBLite consensus disorder prediction 33 55 - -
Lsi07g00408 271 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Lsi07g00408 271 MobiDBLite consensus disorder prediction 1 55 - -
Lsi07g00408 271 MobiDBLite consensus disorder prediction 8 22 - -
Lsi07g00408 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 271 IPR044246 GO:0009788
Lsi07g00408 271 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lsi07g00408 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02086 Lsi-Chr4:28065646 Lsi07g00408 Lsi-Chr7:4401433 1.00E-30 dispersed
Lsi05g00247 Lsi-Chr5:3199666 Lsi07g00408 Lsi-Chr7:4401433 1.21E-26 dispersed
Lsi05g00261 Lsi-Chr5:3333039 Lsi07g00408 Lsi-Chr7:4401433 1.31E-31 dispersed
Lsi07g00408 Lsi-Chr7:4401433 Lsi08g01238 Lsi-Chr8:20839698 2.95E-37 dispersed
Lsi03g01624 Lsi-Chr3:27353314 Lsi07g00408 Lsi-Chr7:4401433 4.02E-21 transposed
Lsi04g00752 Lsi-Chr4:7003295 Lsi07g00408 Lsi-Chr7:4401433 1.52E-25 transposed
Lsi06g01132 Lsi-Chr6:21572806 Lsi07g00408 Lsi-Chr7:4401433 7.30E-18 transposed
Lsi02g02672 Lsi-Chr2:33194261 Lsi07g00408 Lsi-Chr7:4401433 8.19E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25612 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00408 - - csv:101205862 459.914