Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00408 | ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCCAATTCCCAACTGGGTTTGGATCTCAGTCTTTCTAATAACGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAGGAACAGAACCTACAGATACAGAAACAGAGCCAAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGAGGACACCAAAATGCCCACAAGCGAGAAAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTTGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTTAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTCTTCATGTTTCTGCAATTGGGTCATCAGGAATTTATGGTCACAGTGGATGGTCGAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTCAGAGGTATTTCGTCGAACACTGGAGCTGCAAGGTTTGAGGGTGTGAAGAAATTCTCTCCGGCGGCAGTCACGGAGGCGCCACCGCCGCTCGGAGGTTTCTGGTGGGATAGCGGCGGCGGTGGCGGTGGTGGTGGTGGGGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA | 816 | 48.41 | MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNNDSDHGSNPELNLIDCFDVNLGTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFEGVKKFSPAAVTEAPPPLGGFWWDSGGGGGGGGGGGFSHLKMKPKQDELLKLDLSLKL | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4401433 | 4402248 | + | Lsi07G004080.1 | Lsi07g00408 | 666830 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00408 | 271 | Gene3D | Classic Zinc Finger | 67 | 130 | - | - | |
Lsi07g00408 | 271 | PANTHER | ZINC FINGER PROTEIN 1-LIKE | 1 | 271 | - | - | |
Lsi07g00408 | 271 | MobiDBLite | consensus disorder prediction | 33 | 55 | - | - | |
Lsi07g00408 | 271 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 112 | IPR036236 | - | |
Lsi07g00408 | 271 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Lsi07g00408 | 271 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Lsi07g00408 | 271 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 1 | 271 | IPR044246 | GO:0009788 | |
Lsi07g00408 | 271 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
Lsi07g00408 | 271 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 112 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02086 | Lsi-Chr4:28065646 | Lsi07g00408 | Lsi-Chr7:4401433 | 1.00E-30 | dispersed | |
Lsi05g00247 | Lsi-Chr5:3199666 | Lsi07g00408 | Lsi-Chr7:4401433 | 1.21E-26 | dispersed | |
Lsi05g00261 | Lsi-Chr5:3333039 | Lsi07g00408 | Lsi-Chr7:4401433 | 1.31E-31 | dispersed | |
Lsi07g00408 | Lsi-Chr7:4401433 | Lsi08g01238 | Lsi-Chr8:20839698 | 2.95E-37 | dispersed | |
Lsi03g01624 | Lsi-Chr3:27353314 | Lsi07g00408 | Lsi-Chr7:4401433 | 4.02E-21 | transposed | |
Lsi04g00752 | Lsi-Chr4:7003295 | Lsi07g00408 | Lsi-Chr7:4401433 | 1.52E-25 | transposed | |
Lsi06g01132 | Lsi-Chr6:21572806 | Lsi07g00408 | Lsi-Chr7:4401433 | 7.30E-18 | transposed | |
Lsi02g02672 | Lsi-Chr2:33194261 | Lsi07g00408 | Lsi-Chr7:4401433 | 8.19E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25612 | None | None | None | None | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00408 | - | - | csv:101205862 | 459.914 |