Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00429 ATGCCGAAGCTGGTTTTGAAAGGTGGGAGTAGGCCGCCATGGGTTGGTTTAGCTGCTGCTGTTTGGGTTCAAATAGCTGGTGGTTCTTCTTATAACTTCTCTCTTTATTCACACTTGCTTAAATCTGTTCTGGGTCTGAATCAGCAGCAGCTTACTGTGCTGGGAGTGGCTAATGACATTGGAGAGAGTATGGGTTTGGTTCCTGGCCTTGCCTGTAACAAATTTCCTCCATGGGTTATACTTTTGTTTGGTGCTTTCTGTTGCTTTGTGGGTTATGGGGCTATTTGGCTTGCTGTTAGTAGGACTGTCCCCAATCTGCCTTATTGGCTGCTATGGCTCACACATTGTATTGCTACAAATAGCAATGCATGGTTTGGAACAGCTGTGCTCGTAACCAACATGAGGAACTTTCCTCTCAGCAGAGGTACTGTTGCTGGCATTCTTAAAGGTTATGTCGGGCTTAGTGCCGCTGTATACACGGTGATATACAGTATGGTGCTCAGAAAGTCTGCTTTGAATTTACTGTTGTTTCTTGCAATCGGGATACCCATTTTGTGCTTAGCCTTGATGTACTTTGTTCGACCTTGTACTCCGGCTTCATCAGAGGATCCATCTGAGCGTGCTCATTTTCTTTTCACGCAAGCTGCTTGTGTATTGCTAGCTGTTTTTTTGGTCTCAACCACAATTCTAGATGCAACAACAACCCCTAGCGACGCCGTTGCATACACCTTAGTTGGCATAATGGTTATCCTTTTAATGTCTCCTCTTGCAGTTCCCATAAAAATGACCATTTGTGCAAAAACCAAAAAACTTGGCCCTCGAGTTGATTCTGCAGAACCTTTGGCTTCTGGAGAAAGTGATTCTTCCCAAATTGAACCTTTATTGACACCATCTTCCTCGGCTACAAATCTTGGAAGTTTCTATGAGAATGATGATGCATCAGATGTAGAAACACTTCTTGCTGTAGGAGAGGGAGCAATTCATAAGAAGAAGAGAAGACCTAAAAGAGGGGAAGATTTCAGGCTCCGTGAAGCTGTAATCAAAGCTGATTTCTGGTTGCTTTGGTTCTTGTACTTCCTCGGGGTCGGTCCAGGAATAACGGTTCTCAACAATTTGTCTCAAATTGGGATTTCATTAGGTGTTAATGACACAACATTGCTGTTGGCTCTTTTCAGCTTTTGCAATTTTGTCGGTCGTCTAGGCTCCGGTGTTATTTCCGAACACTTCGTCAGGTCAAGAATGATACCTCGCTCGCTGTGGATGATGTTTGCACTTATACTCATGGCCATAGCATTCCTCCTGTATGCGTCCGCTCTCACGGGTACTCTCTACGTCGCCACTGGTCTCACTGGAATCAGCTACGGAGTTTTATATTCTATGATGGTCCCACTCGCGTCTGAGATTTTCGGTCTAAAGAATTTCGGAGTAATCTTCAACTTCATGCAGCTGGGGAATCCAATAGGAGCAGTCCTTTTCTCAGTTCTACTCGCCAGTACTTTATACGACAACGAAGCTGCTAAGCAAGGTTCGATAACCTGCATAGGCCAACAGTGCTTCAGGACGACTTTCTTCATCCTTTCGGGCGTTGCTGGGTTAGGTTCAATCGTGAGCATAATTCTGACCGTTAGATTGAGGCCAGTCTATCAAATGCTTTACTCCGGTGGCTCGTTCCGCTTGCCTCAAAGTTCAGGTCATTGA 1698 44.94 MPKLVLKGGSRPPWVGLAAAVWVQIAGGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGESMGLVPGLACNKFPPWVILLFGAFCCFVGYGAIWLAVSRTVPNLPYWLLWLTHCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSMVLRKSALNLLLFLAIGIPILCLALMYFVRPCTPASSEDPSERAHFLFTQAACVLLAVFLVSTTILDATTTPSDAVAYTLVGIMVILLMSPLAVPIKMTICAKTKKLGPRVDSAEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDASDVETLLAVGEGAIHKKKRRPKRGEDFRLREAVIKADFWLLWFLYFLGVGPGITVLNNLSQIGISLGVNDTTLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMFALILMAIAFLLYASALTGTLYVATGLTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFSVLLASTLYDNEAAKQGSITCIGQQCFRTTFFILSGVAGLGSIVSIILTVRLRPVYQMLYSGGSFRLPQSSGH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4591177 4595732 - Lsi07G004290.1 Lsi07g00429 666851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00429 565 SUPERFAMILY MFS general substrate transporter 13 199 IPR036259 -
Lsi07g00429 565 MobiDBLite consensus disorder prediction 282 296 - -
Lsi07g00429 565 Gene3D MFS general substrate transporter like domains 7 275 IPR036259 -
Lsi07g00429 565 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 565 - -
Lsi07g00429 565 Gene3D MFS general substrate transporter like domains 343 549 IPR036259 -
Lsi07g00429 565 MobiDBLite consensus disorder prediction 276 296 - -
Lsi07g00429 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 565 - -
Lsi07g00429 565 Pfam Nodulin-like 13 260 IPR010658 -
Lsi07g00429 565 SUPERFAMILY MFS general substrate transporter 328 546 IPR036259 -
Lsi07g00429 565 CDD MFS_Mch1p_like 12 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00402 Lsi-Chr3:4595550 Lsi07g00429 Lsi-Chr7:4591177 1.75E-108 dispersed
Lsi07g00429 Lsi-Chr7:4591177 Lsi03g00145 Lsi-Chr3:2070230 7.54E-83 dispersed
Lsi09g01880 Lsi-Chr9:27607407 Lsi07g00429 Lsi-Chr7:4591177 6.25E-61 dispersed
Lsi11g01194 Lsi-Chr11:20389453 Lsi07g00429 Lsi-Chr7:4591177 6.05E-47 dispersed
Lsi07g00429 Lsi-Chr7:4591177 Lsi10g00482 Lsi-Chr10:6946048 4.26E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00429 - - csv:101211550 1074.31