Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00437 ATGACGGACATCAGCTTGGAGGAGATCAAGAATGAGAACATTGATCTTGAGCGCATTCCCGTTGATGAAGTGTTTGAACAACTGAAATGCTCCCGAGAGGGTTTATCCTCAGAGGAGGGGCGTCAGAGGCTCCAACTCTTTGGCCCAAATAAGCTTGAAGAGAAAAAAGAAGATAAATTTCTCAAGTTTTTGGGCTTTATGTGGAATCCACTTTCATGGGTTATGGAAGCTGCAGCTATCATGGCCATAGTTCTTGCCAATGGAGGGGGGCAACCACCGGACTGGCAAGATTTTGTGGGGATTACTGCATTGCTTATTATCAATTCCACAATTAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCTGCACTTATGGCAGGACTTGCACCAAAAACCAAGCAAGGTGAGATCGAGGCCGTTGTAATTGCCACTGGTGTCCACACCTTCTTTGGGAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGGCACTTCCAAAAGCGTACAGCTATTACATATATTGACAATGATGGCAACTGGCATCGAGTTAGCAAAGGAGCACCAGAGCAGATTATCGAACTTTGCGACCTCCGAGATGATATCAAGAAGAAGGCACATTCAATCATCGACAAATTCGCCGATCGTGGTCTTCGTTCTCTTGCTGTTTGCAGACAAACTGTTCCAGAAAAAACCAAAGAAAGTGCTGGAGGACCATGGCAATTTGTTGGTCTCTTGCCTCTCTTTGATCCTCCAAGGCATGACAGTGCAGAGACTATCCGAAGGGCACTCAATCTTGGTGTCAACGTTAAGATGATCACTGGTGACCAATTGGCAATTGGAAAGGAAACTGGGCGTAGACTTGGAATGGGCACAAACATGTACCCATCTTCCTCACTTCTTGGACAAAGCAAGGACGAGTCAATCGCTTCTTTGCCTGTTGATGAGCTTATTGAGAAGGCTGATGGATTTGCAGGCGTCTTCCCTGAGCACAAATATGAAATTGTGAGGAGGCTTCAAGAGAGGAAGCATATCTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCAGCTTTGAAAAAGGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAAGCGCTTCTGATATAGTTTTGACAGAGCCAGGACTGAGTGTGATCGTGAGCGCTGTTTTAACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTATGCAGTCTCAATAACCATCCGTATTGTACTTGGTTTTATGCTTATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTTTGATCATAGCCATTCTCAATGATGGCACCATCATGACCATCTCTAAAGATAGAGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTCCGTGAGATCTTTGCAACTGGCGTTGTCTTGGGCTCATACTTGGCTGTTATGACTGTTGTTTTCTTCTGGGTTGCTCACGCTACCGATTTCTTTACGGACAAATTTGGTGTACACTCCATCAGAGGAAATGAAGGTGAGCTCACAGCAGCTGTGTATCTTCAAGTCAGCACAGTGAGTCAAGCACTCATCTTTGTGACAAGATCTCGAAGCTGGTCCTTTATTGAACGCCCTGGTCTGCTCTTGGTGTTTGCTTTCTTCGTAGCACAGCTGGTGGCTACCCTGATTGCTGTATATGCCAACTGGGGCTTTGCTGACATGAAAGGAATTGGCTGGGGATGGGCAGGAGTGATCTGGATCTACAGCATAATCTTCTACATTCCTCTTGACGTTCTCAAGTTCGCTACTCGATATGCATTGAGTGGCAAGGCTTGGAATAATATGATCCAAAACAAGACTGCTTTCACATCAAAGAAGGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGTACTCTTCATGGCCTACAGCCTCCTGAAACATCTGAACTCTTCAATGACAAAACCAATTACAGGGAGCTGTCCGAAATCGCTGAGCAAGCCAAGAAACGTGCTGAGGTCGCAAGCAACAAGGCACAGAAATCGTAA 2070 45.56 MTDISLEEIKNENIDLERIPVDEVFEQLKCSREGLSSEEGRQRLQLFGPNKLEEKKEDKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKRTAITYIDNDGNWHRVSKGAPEQIIELCDLRDDIKKKAHSIIDKFADRGLRSLAVCRQTVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWVAHATDFFTDKFGVHSIRGNEGELTAAVYLQVSTVSQALIFVTRSRSWSFIERPGLLLVFAFFVAQLVATLIAVYANWGFADMKGIGWGWAGVIWIYSIIFYIPLDVLKFATRYALSGKAWNNMIQNKTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSELFNDKTNYRELSEIAEQAKKRAEVASNKAQKS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4655089 4659262 - Lsi07G004370.1 Lsi07g00437 666859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00437 689 SUPERFAMILY HAD-like 243 397 IPR036412 -
Lsi07g00437 689 PANTHER CALCIUM-TRANSPORTING ATPASE 4 135 - -
Lsi07g00437 689 PANTHER CALCIUM-TRANSPORTING ATPASE 134 170 - -
Lsi07g00437 689 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 610 IPR023298 -
Lsi07g00437 689 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lsi07g00437 689 Coils Coil 665 685 - -
Lsi07g00437 689 PRINTS H+-transporting ATPase (proton pump) signature 382 407 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 PRINTS H+-transporting ATPase (proton pump) signature 523 544 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 PRINTS H+-transporting ATPase (proton pump) signature 323 339 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 PRINTS H+-transporting ATPase (proton pump) signature 351 367 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 PRINTS H+-transporting ATPase (proton pump) signature 208 226 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 326 439 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi07g00437 689 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 169 685 - -
Lsi07g00437 689 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 134 170 - -
Lsi07g00437 689 PANTHER CALCIUM-TRANSPORTING ATPASE 169 685 - -
Lsi07g00437 689 Gene3D - 663 688 - -
Lsi07g00437 689 PRINTS P-type cation-transporting ATPase superfamily signature 374 386 - -
Lsi07g00437 689 PRINTS P-type cation-transporting ATPase superfamily signature 268 278 - -
Lsi07g00437 689 PRINTS P-type cation-transporting ATPase superfamily signature 246 257 - -
Lsi07g00437 689 PRINTS P-type cation-transporting ATPase superfamily signature 351 370 - -
Lsi07g00437 689 Gene3D - 167 257 IPR023299 GO:0000166
Lsi07g00437 689 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 4 135 - -
Lsi07g00437 689 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 170 254 IPR023299 GO:0000166
Lsi07g00437 689 Pfam haloacid dehalogenase-like hydrolase 166 365 - -
Lsi07g00437 689 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lsi07g00437 689 Gene3D - 353 609 - -
Lsi07g00437 689 Gene3D - 66 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00322 Lsi-Chr2:2742661 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi02g01502 Lsi-Chr2:20847413 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi06g01045 Lsi-Chr6:20654344 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi06g01491 Lsi-Chr6:25366643 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi07g00437 Lsi-Chr7:4655089 Lsi08g01132 Lsi-Chr8:19941870 0 dispersed
Lsi07g00437 Lsi-Chr7:4655089 Lsi11g00377 Lsi-Chr11:3879425 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00437 K01535 - csv:101212751 971.844