Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00438 ATGGGAAGACCTCAACAACGCTATCGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCAGAAGACGCCGCCAGAGCATACGACGAAGCAGCTACAATTATGTGTTGCCCAAACAATCTCCCAACCAATAACAATGCGCCACCTCATCCCTCGTCGGCGCCGCCGTCCTCTAAGCTTCTAACTCCCACTTTGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCACTTCGCCGTCCGGAAATCCCCCGACCCAACTCACCGTCCGCCCACCAAACTCCACGGCAGTCACTGGCCGGAAACAGAGGTCAAGTGGGTCGCCGGCGGGGAGGCTGAGGAGGTCCGCCGCCTTGAAGATGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTCGGTTCTACAAAATAA 528 52.46 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKLHGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTK 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4672409 4674084 - Lsi07G004380.1 Lsi07g00438 666860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00438 175 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677
Lsi07g00438 175 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lsi07g00438 175 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 PANTHER ETHYLENE RESPONSE FACTOR 1 165 - -
Lsi07g00438 175 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
Lsi07g00438 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 165 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02675 Lsi07g00438 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02091 Lsi-Chr4:28094084 Lsi07g00438 Lsi-Chr7:4672409 2.92E-51 dispersed
Lsi07g00438 Lsi-Chr7:4672409 Lsi08g01234 Lsi-Chr8:20802008 6.42E-49 dispersed
Lsi08g01235 Lsi-Chr8:20809012 Lsi07g00438 Lsi-Chr7:4672409 7.46E-19 dispersed
Lsi07g00438 Lsi-Chr7:4672409 Lsi02g02675 Lsi-Chr2:33219838 1.81E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25615 PF00847 AP2 3.90E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00438 - - csv:101207788 255.758