Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00440 ATGGCCCTTCGCCCCTTCTTCTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAGGAATTGCACTCGGCTACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTAAAGGTCTGGAGCAACAAAGCAGACATGGAATTCTCTGTGGAAGTTGAGATACTGGCTCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGCTTGATTGTGTATGACTACATGCCGAATCTAAGTCTACTCTCCCATCTTCATGGACATCACTCATCAGAATGCCACCTCGATTGGAAACGTCGTATGAAAATTGCTATTGGGTCTGCTGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACATATCATTCATCGAGACGTCAAAGCTAGTAATGTTTTGCTGGATCCAGATTTCCAAGCTCGTGTAGCTGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTCGCTCCTGAATATGCCATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCCTGCTTGAGCTTGCCACCGGCAAGAAGCCTCTTGAGAAATTGAGTGCAACAATGAAACGCACAATCGTAGATTGGGCACTACCAATTGCAGTTGAGAAAAAATTCGACGAACTTGCAGACCCGAAGCTAAATGGAGACTACAGTGCAGACGAACTAAAGAGAGTCATCCTTGTTGCACTCTGTTGTTCCCATTCAAGACCCGAGAAACGACCAACCATGCTAGAGGTGGTTGAGCTGCTAAAAGGAGAATCAAAAGAGAAGTTAGCCAAATTAGAAGACGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGGATTCAAAAGAGAAGGAGAAAGAGAATTCAACACAAAACCCCACATGA 1110 44.59 MALRPFFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDVKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIVDWALPIAVEKKFDELADPKLNGDYSADELKRVILVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEIQAGEDSSDFISEEKDSKEKEKENSTQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4686133 4690129 - Lsi07G004400.1 Lsi07g00440 666862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00440 369 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00440 369 PANTHER OS01G0750732 PROTEIN 1 366 - -
Lsi07g00440 369 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Lsi07g00440 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Lsi07g00440 369 MobiDBLite consensus disorder prediction 347 369 - -
Lsi07g00440 369 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Lsi07g00440 369 PANTHER BNAA05G14800D PROTEIN 1 366 - -
Lsi07g00440 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00440 369 MobiDBLite consensus disorder prediction 337 369 - -
Lsi07g00440 369 Coils Coil 305 325 - -
Lsi07g00440 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Lsi07g00440 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lsi07g00440 369 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00440 369 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01283 Lsi-Chr5:20620850 Lsi07g00440 Lsi-Chr7:4686133 1.58E-145 dispersed
Lsi06g01108 Lsi-Chr6:21334888 Lsi07g00440 Lsi-Chr7:4686133 3.93E-144 dispersed
Lsi07g00440 Lsi-Chr7:4686133 Lsi11g00260 Lsi-Chr11:2621815 3.87E-93 dispersed
Lsi11g00748 Lsi-Chr11:8321372 Lsi07g00440 Lsi-Chr7:4686133 5.60E-74 dispersed
Lsi07g00440 Lsi-Chr7:4686133 Lsi06g00871 Lsi-Chr6:18218127 5.97E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83768 PF00069 Pkinase 1.20E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00440 - - csv:101212993 689.108