Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00464 ATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATTGGCAGAGCATATTTGCCTGTTCGAGAGATTATACATGGTGAAGAAGTTGATAAATGGGTTCCAATCTTAGATGAACGTAAGAATCCCATTCGTGGGGAACCTAAAATTCATGTCAAATTACAGTATTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCCCAAGTTTCCTGGTGTTCCCTACACTTATTTCTCCCAAAGACGAGGTTGTAAGGTAACTCTGTATCAAGATGCTCATGTTCCAGACAACTTTATCCCTAAAATCCCTCTTGCTGGAGGCAAGTTTTATGAGCCACATCGATGTTGGGAAGATGTTTTTGATGCAATTACTAATGCTAAACACTTGATTTACATTTCTGGATGGTCTGTTTACACTGAGATTTCTTTGGTGAGAGATAGAAGAAGGCCAAAGCCTGGTGGAGATGTAATGCTCGGCGAATTGCTTAAGAGAAAGGCTGGGGAAGGAGTTAGAGTTCTTTTGCTTATTTGGAATGATACAACTTCTGTTCCTATATTGAAGGAGGAGGGTCTAATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTCCATTGTGTTTTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGACATTGCTGTTGGGACAATGTTCACTCACCATCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCTAACAGAAGGAGAATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGCAGGTATGATACGCCATTTCATTCCCTTTTCAGGACTTTAGATTCTGCTCATCATGATGATTTCCATCAGCCAAACTTCGCTGGTACTTCCATAAACAAAGGCGGTCCTAGAGAGCCGTGGCACGACATCCATTCCCGCCTCGAAGGACCTGTTGCTTGGGATGTTTTGTACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGAAAGGATTTGCTTGTGAAATTGAGAGATTTAGACGAGATCTTCATCACTCCATCACCTGTCACGTTCCCCGACGACTTCGACAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCGGCTTTCGGTTTTCCTGACTCGCCTGAAGAAGCAGCAAAAGCAGGGCTGATAAGTGGAAAAGACAACACCATTGATCGAAGTATTCAAGATGCTTACATTAACGCCATTAGAAGAGCAAAGAATTTCATATACATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTGATGATGTGAAGCCTGAGATGATCAATGCTCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCCAGAGAGAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGAGGAACAGTTCAAGCAATATTAGACTGGCAAAGGAGGACAATGGAAATGATGTATAAAGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTGACATTCTTTTGTGTTGGGAATCTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCAATGGGAGCTTACCAGCCATATCATTTATCAACTAGAGAGCCAGCACGAGGCCAAGTCCATGGCTTTCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTCTTCCCAGAAAGTATTGAGTGTGTTAAGAAAGTAAACCAACTTGCTGAAAAATATTGGGATCTATACTCAAGTGAGAGCTTTGAACATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCCGTCTCCGCCGACGGTCAAGTTACTGAGCTTCCCGGGTTCGAGTACTTCCCTGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAATTATCTCCCTCCAATCCTCACTACTTGA 2052 42.79 MASNIIFTVKDDNPIGATLIGRAYLPVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDVFDAITNAKHLIYISGWSVYTEISLVRDRRRPKPGGDVMLGELLKRKAGEGVRVLLLIWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRDLDEIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDVKPEMINALHLIPKELSLKIVSKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNLDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTREPARGQVHGFRLALWYEHLGLLHQSFLFPESIECVKKVNQLAEKYWDLYSSESFEHDLPGHLLRYPIAVSADGQVTELPGFEYFPDTKARVLGNKSNYLPPILTT 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4922920 4925822 - Lsi07G004640.1 Lsi07g00464 666886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00464 683 Gene3D Endonuclease Chain A 391 536 - -
Lsi07g00464 683 SMART pld_4 526 556 IPR001736 GO:0003824
Lsi07g00464 683 SMART pld_4 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Pfam Phospholipase D Active site motif 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Gene3D C2 domain 1 72 IPR035892 -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 540 683 - -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 2 539 - -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 540 683 IPR015679 -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 2 539 IPR015679 -
Lsi07g00464 683 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Gene3D Endonuclease Chain A 116 356 - -
Lsi07g00464 683 SUPERFAMILY Phospholipase D/nuclease 66 351 - -
Lsi07g00464 683 SUPERFAMILY Phospholipase D/nuclease 413 613 - -
Lsi07g00464 683 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 63 IPR035892 -
Lsi07g00464 683 Pfam Phospholipase D C terminal 602 673 IPR024632 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00464 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101215246 1351.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g02718 Lsi07g00464 CCT
Lsi02g02718 Lsi07g00464 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00464 Lsi-Chr7:4922920 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi02g02718 Lsi-Chr2:33509587 Lsi07g00464 Lsi-Chr7:4922920 0 wgd
Lsi07g00464 Lsi-Chr7:4922920 Lsi08g01204 Lsi-Chr8:20575171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g537 . Blo06g00662 . Bda10g00782 Bpe06g00699 . . . . . Cma01g00139 . Car01g00123 . Sed05g1449 . Cpe17g00574 Bhi01g03552 Tan04g2586 Cmetu07g1549 Lac11g0678 Hepe02g1369 . . Cla07g01209 Cam07g1296 Cec07g1387 Cco07g1343 Clacu07g1268 Cmu07g1245 Cre07g1625 . . . . Lsi02g02718 Csa07g02159 . Cme01g02610 Blo07g00714 . . . . . . Bma15g00411 . Cmo01g00146 . Cma08g00678 . Car08g00568 . Cpe02g01652 . Bhi09g00029 Tan06g0407 . . . . . Cla09g00253 Cam09g0275 Cec09g0278 Cco09g0271 Clacu09g0279 . Cre09g0266 Lsi07g00464 . Chy01g02000 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00464 Lsi_Chr07 FPKM 7.02193 5.708621 6.035633 6.206101 12.113489 11.793062 12.247544 7.206874 6.793751 6.240383