Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00464 ATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATTGGCAGAGCATATTTGCCTGTTCGAGAGATTATACATGGTGAAGAAGTTGATAAATGGGTTCCAATCTTAGATGAACGTAAGAATCCCATTCGTGGGGAACCTAAAATTCATGTCAAATTACAGTATTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCCCAAGTTTCCTGGTGTTCCCTACACTTATTTCTCCCAAAGACGAGGTTGTAAGGTAACTCTGTATCAAGATGCTCATGTTCCAGACAACTTTATCCCTAAAATCCCTCTTGCTGGAGGCAAGTTTTATGAGCCACATCGATGTTGGGAAGATGTTTTTGATGCAATTACTAATGCTAAACACTTGATTTACATTTCTGGATGGTCTGTTTACACTGAGATTTCTTTGGTGAGAGATAGAAGAAGGCCAAAGCCTGGTGGAGATGTAATGCTCGGCGAATTGCTTAAGAGAAAGGCTGGGGAAGGAGTTAGAGTTCTTTTGCTTATTTGGAATGATACAACTTCTGTTCCTATATTGAAGGAGGAGGGTCTAATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTCCATTGTGTTTTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGACATTGCTGTTGGGACAATGTTCACTCACCATCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCTAACAGAAGGAGAATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGCAGGTATGATACGCCATTTCATTCCCTTTTCAGGACTTTAGATTCTGCTCATCATGATGATTTCCATCAGCCAAACTTCGCTGGTACTTCCATAAACAAAGGCGGTCCTAGAGAGCCGTGGCACGACATCCATTCCCGCCTCGAAGGACCTGTTGCTTGGGATGTTTTGTACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGAAAGGATTTGCTTGTGAAATTGAGAGATTTAGACGAGATCTTCATCACTCCATCACCTGTCACGTTCCCCGACGACTTCGACAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCGGCTTTCGGTTTTCCTGACTCGCCTGAAGAAGCAGCAAAAGCAGGGCTGATAAGTGGAAAAGACAACACCATTGATCGAAGTATTCAAGATGCTTACATTAACGCCATTAGAAGAGCAAAGAATTTCATATACATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTGATGATGTGAAGCCTGAGATGATCAATGCTCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCCAGAGAGAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGAGGAACAGTTCAAGCAATATTAGACTGGCAAAGGAGGACAATGGAAATGATGTATAAAGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTGACATTCTTTTGTGTTGGGAATCTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCAATGGGAGCTTACCAGCCATATCATTTATCAACTAGAGAGCCAGCACGAGGCCAAGTCCATGGCTTTCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTCTTCCCAGAAAGTATTGAGTGTGTTAAGAAAGTAAACCAACTTGCTGAAAAATATTGGGATCTATACTCAAGTGAGAGCTTTGAACATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCCGTCTCCGCCGACGGTCAAGTTACTGAGCTTCCCGGGTTCGAGTACTTCCCTGATACTAAGGCGCGAGTTCTAGGTAACAAATCTAATTATCTCCCTCCAATCCTCACTACTTGA 2052 42.79 MASNIIFTVKDDNPIGATLIGRAYLPVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSPKFPGVPYTYFSQRRGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDVFDAITNAKHLIYISGWSVYTEISLVRDRRRPKPGGDVMLGELLKRKAGEGVRVLLLIWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRDLDEIFITPSPVTFPDDFDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGDDVKPEMINALHLIPKELSLKIVSKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNLDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTREPARGQVHGFRLALWYEHLGLLHQSFLFPESIECVKKVNQLAEKYWDLYSSESFEHDLPGHLLRYPIAVSADGQVTELPGFEYFPDTKARVLGNKSNYLPPILTT 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4922920 4925822 - Lsi07G004640.1 Lsi07g00464 666886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00464 683 Gene3D Endonuclease Chain A 391 536 - -
Lsi07g00464 683 SMART pld_4 526 556 IPR001736 GO:0003824
Lsi07g00464 683 SMART pld_4 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Pfam Phospholipase D Active site motif 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Gene3D C2 domain 1 72 IPR035892 -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 540 683 - -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 2 539 - -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 540 683 IPR015679 -
Lsi07g00464 683 PANTHER PHOSPHOLIPASE D 2 539 IPR015679 -
Lsi07g00464 683 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Lsi07g00464 683 Gene3D Endonuclease Chain A 116 356 - -
Lsi07g00464 683 SUPERFAMILY Phospholipase D/nuclease 66 351 - -
Lsi07g00464 683 SUPERFAMILY Phospholipase D/nuclease 413 613 - -
Lsi07g00464 683 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 63 IPR035892 -
Lsi07g00464 683 Pfam Phospholipase D C terminal 602 673 IPR024632 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02718 Lsi07g00464 CCT
Lsi02g02718 Lsi07g00464 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00464 Lsi-Chr7:4922920 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi02g02718 Lsi-Chr2:33509587 Lsi07g00464 Lsi-Chr7:4922920 0 wgd
Lsi07g00464 Lsi-Chr7:4922920 Lsi08g01204 Lsi-Chr8:20575171 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00464 K01115 - csv:101215246 1351.65