Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00465 GGAGTGAGGCAACGGCAGTGGGGCTCATGGGTCTCTGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACAGCCGAAGATGCAGCTCGAGCCTACGATGAGGCCGCCGTTCTCATGAGCGCTCCATTTTCGTCGTTGTCGACAATTATCAACGCTAAACTTCGAAAGTGTTGGAAATCTCTTCCTCCTTCTCTAACTTGCCTTCGTCTTGACACCGAAAGTTGTCGCATTGGCGTTTGGCAGAGACGTGTGGGACGTTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTTGAGAAGAAGAACAACGACGAATTCCGAGTAACGGATGAGTCGTTGGAAAAGGGTGTGGAAGATCAGGTCAGACTTTCAAATGGGGCACAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTACAAATGATTGAAGAACTTTTGAACAAGATA 468 48.29 GVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSAPFSSLSTIINAKLRKCWKSLPPSLTCLRLDTESCRIGVWQRRVGRCRVVDSNWVMMVELEKKNNDEFRVTDESLEKGVEDQVRLSNGAQSLDEEERAALQMIEELLNKI 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4943990 4944791 + Lsi07G004650.1 Lsi07g00465 666887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00465 156 SMART rav1_2 1 65 IPR001471 GO:0003700|GO:0006355
Lsi07g00465 156 PANTHER ETHYLENE RESPONSE FACTOR 1 48 - -
Lsi07g00465 156 ProSiteProfiles AP2/ERF domain profile. 1 59 IPR001471 GO:0003700|GO:0006355
Lsi07g00465 156 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 48 - -
Lsi07g00465 156 PANTHER ETHYLENE RESPONSE FACTOR 47 155 - -
Lsi07g00465 156 Pfam AP2 domain 1 42 IPR001471 GO:0003700|GO:0006355
Lsi07g00465 156 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 155 - -
Lsi07g00465 156 SUPERFAMILY DNA-binding domain 1 49 IPR016177 GO:0003677
Lsi07g00465 156 CDD AP2 1 45 IPR001471 GO:0003700|GO:0006355
Lsi07g00465 156 Coils Coil 135 155 - -
Lsi07g00465 156 Gene3D AP2/ERF domain 1 57 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02133 Lsi-Chr4:28467155 Lsi07g00465 Lsi-Chr7:4943990 7.30E-52 dispersed
Lsi07g00465 Lsi-Chr7:4943990 Lsi08g01234 Lsi-Chr8:20802008 6.40E-25 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi07g00465 Lsi-Chr7:4943990 4.10E-50 wgd
Lsi06g00969 Lsi-Chr6:19664746 Lsi07g00465 Lsi-Chr7:4943990 6.21E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25616 PF00847 AP2 5.10E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00465 - - csv:101211468 236.498