Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00483 ATGGAGAATCTAAGGGCTCCATTTAGGGGTATTGTGGATGATATCAGAGGAAGAGCTGCCTGTTATAAGCAAGATTGGGTTGATGGTGGACTTTCAGGAATTGGAATTTTGGCCCCAACTGCTTACATTTTTTTCGCTTCTGCACTTCCTGTCATTGCTTTTGGTGAGCAATTGAGCCGAGATACAGATGGAAGGTTGAGCACAGTAGAAACATTGGCTTCCACAGCCATTTGTGGCATCCTTCATTCAATTCTTGGTGGGCAACCTCTCCTAGTTGTAGGGGTTGCAGAACCTACAATTATTATGTATACCTATTTGTACAATTTTTGCAAGAAAAGGGAAGATATAGGGGAGGTCCTCTTCTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACAGCCCTCTTGCTGTTTCTTCTTGCTATATTCAATGCTTCTAGTCTTATCAACAAATTTACAAGGATTGCAGGGGAACTTTTTGGCATGTTAATCTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCCCAGACTGAGAATATGAGTTTAGAGAAGTATCAATTTCATTGGCTTTACACGAATGGATTACTGGGAATCATCTTTACTTTTGGCCTTCTCTATACTGCCTTGAAGAGCAGAAAGGCAAGATCGTGGTTGTATGGGACAGGCTGGCTAAGGAGTTTCATTGCAGACTATGGAGTTCCTCTGATGGTATTGGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCGTTTGGGGTTCCTAGAAGACTTCAAAGTCCTTTGGCATGGCAATCTACTTCTCTGCACCATTGGACCGTTGTCAAGGTGAATCCTCTGCCCCTTGGCATTGTAGTCTTGAGGTCTTGTAGTATGGTTTATCTTGAAGACATGGGGAAGATACCTCCTGCGTACATCTTTGCGGCCTTTATTCCTGCTGTGATGATTGCAGGACTTTATTTTTTTGATCATAGTGTTGCTTCTCAGATGGCACAACAAAAGGAGTTTAATCTCAAGAACCCTTCTGCTTACCACTATGACATCCTGTTGCTGGGATTTATGACATTGCTTTGTGGGTTAATCGGGCTTCCTCCTTCAAATGGGGTCTTGCCACAGTCTCCCATGCACACCAAGTGTCTTGCAACTCTCAGGAGGCGTTTGATGCGAAGGAAGATGGTAGAAAGTGCAAAGGAAAGCATAAAAAGGAAAGCTAGTGATTCTGAAATCTACGGCCATATGCAAGCTGTGTTCTTAGAAATGGAGAGCAGCCCAATTACGACATCAGTAGTCAAAGAGCTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAGTAAGGATGAAAATGCAAATGTTACATTTGACCCAGAGAGGCATATTGATGCTTATCTTCCTGTTCGAGTGAACGAGCAAAGATTGAGCAATCTACTACAATCACTTCTGGTGGCAGCATCAGTATTTGCTTTACCAGCAATAAAGAAGATACCAACATCAGTTCTCTGGGGTTACTTTGCGTATATGGCCATTGACAGTCTACCTGGAAACCAATTTTGGGAAAGGATTTTACTTCTCTTTGTAATGCCTAATCGACGTTACAAGGTCCTAGAAGGTTTTCATGCTTCCTTTGTGGAGTCTGTTCCATTCAAATACATAGCCGCATTCACTCTATTTCAATTTGTATATTTTCTCATTTGTTTTGGAGTGACTTGGATCCCCATAGCTGGAGTCTTGTTTCCTTTGCCCTTTTTCCTTCTCATCGGCATCAGACATCGCATCCTTCCCAAGCTACTCCAACCTCATTATTTGCAGGAGCTCGACGCAGTTGAGTACGAAGAACTAACCGGTACCTCAATTCTCTCGCTTAGCCTGTCTATCAAGGAAAAGAATGTCACTCGTATAGTTGATAATGAAGATGTAGTTGAAATATGTGATGCTGAAATACTTGATGAGTTGACAACCAATAGAGGGGAGTTGAAAGTTAGAACTAAAAGCTTCAACGAGGATAGACACAATCAGCTCAATGCCCTAAAACGTCTTCCTTCATCATCGACGGCAGCATCTGCTGCTCCATCGGTATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCACCTTACGTTTCGCTCTTCACTCGCCATTTCAGTGCCGAGGCTGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCACGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCTCTGTGTGCACGCAGTATTTTGTGCTGGAAGTGGTGGGACCTGGAGGATCACCAGATGGTTATGGAGACGATGATCACCATCATTGA 2550 43.8 MENLRAPFRGIVDDIRGRAACYKQDWVDGGLSGIGILAPTAYIFFASALPVIAFGEQLSRDTDGRLSTVETLASTAICGILHSILGGQPLLVVGVAEPTIIMYTYLYNFCKKREDIGEVLFLAWAGWVCVWTALLLFLLAIFNASSLINKFTRIAGELFGMLISVLFIQEAIKGVVSEFEVPQTENMSLEKYQFHWLYTNGLLGIIFTFGLLYTALKSRKARSWLYGTGWLRSFIADYGVPLMVLVWTALSFSVPSKVPFGVPRRLQSPLAWQSTSLHHWTVVKVNPLPLGIVVLRSCSMVYLEDMGKIPPAYIFAAFIPAVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLATLRRRLMRRKMVESAKESIKRKASDSEIYGHMQAVFLEMESSPITTSVVKELEDLKEAVMKGESKDENANVTFDPERHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPNRRYKVLEGFHASFVESVPFKYIAAFTLFQFVYFLICFGVTWIPIAGVLFPLPFFLLIGIRHRILPKLLQPHYLQELDAVEYEELTGTSILSLSLSIKEKNVTRIVDNEDVVEICDAEILDELTTNRGELKVRTKSFNEDRHNQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5076049 5087821 - Lsi07G004830.1 Lsi07g00483 666905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00483 849 CDD Cyt_c_Oxidase_Vb 739 835 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lsi07g00483 849 Pfam Cytochrome c oxidase subunit Vb 750 836 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lsi07g00483 849 Gene3D Helical hairpin bin 18 60 - -
Lsi07g00483 849 Gene3D Cytochrome c oxidase, subunit Vb 740 833 IPR036972 GO:0005740|GO:0005751|GO:0006123
Lsi07g00483 849 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 738 837 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lsi07g00483 849 SUPERFAMILY Rubredoxin-like 740 836 - -
Lsi07g00483 849 PANTHER ANION EXCHANGE PROTEIN 1 682 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lsi07g00483 849 Pfam HCO3- transporter family 7 183 IPR011531 GO:0006820|GO:0016021
Lsi07g00483 849 Pfam HCO3- transporter family 192 393 IPR011531 GO:0006820|GO:0016021
Lsi07g00483 849 Pfam HCO3- transporter family 474 564 IPR011531 GO:0006820|GO:0016021
Lsi07g00483 849 PANTHER BORON TRANSPORTER 4-RELATED 1 682 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01144 Lsi-Chr3:21678123 Lsi07g00483 Lsi-Chr7:5076049 0 dispersed
Lsi07g00483 Lsi-Chr7:5076049 Lsi07g00484 Lsi-Chr7:5095006 2.98E-78 tandem
Lsi09g00535 Lsi-Chr9:5590499 Lsi07g00483 Lsi-Chr7:5076049 2.18E-91 transposed
Lsi07g00483 Lsi-Chr7:5076049 Lsi08g01171 Lsi-Chr8:20326857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00483 K24194 - csv:101210964 1184.09