Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00504 ATGGATTTCTGGCCGGAATTTCTCGCTAGCAGTTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGTGTCGCCGGCATCGTCTCCGGCTACCCACTCGACACTCTTCGCATCCGACAACAAAACTCCACCTCCGGCTCCGCCATCAGCGTCCTTCGTAACATCATGTCCAATGGCGGCCCCGCCGCCCTCTACAGAGGAATGGGAGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCATTGTTTTCCAGACCAACGCCGTGCTCTGCAGAGCGTTCGATCCAGCGGCGACAGACAACCGTCCACCGTCGTACAAGGCGGTAGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTTTAACACCGGTGGAGCTTGTGAAAATCCGTCTTCAATTACAGGATTTGGGTTCATCAAATCACACAGATCTGAGTTCATCTCGGCTCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGGCTATACAGAGGCTTAACAATCACAATGCTAAGAGATGCTCCTTCCCATTGCTTTTACTTTTGGACTTACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGCAGGAAATCCGGTCAAGAGACATTGAGAACGATGCTCGTAGCCGGAGGACTGGCCGGCGTCGCCAGTTGGGTTTGTTGTTACCCATTGGATGTGGTTAAAACCAGACTTCAAGCTCAATCGAAATTCGCGTTTCAAAAGTACAGTGGAATTATGGATTGTTTCTATAAGAGCGTGAAAGAAGAAGGGTACAGTGTTTTATGGCGTGGATTAGGAACCGCCATAGCTAGAGCTTTTGTAGTGAATGGAGCCATTTTTTCTGCTTATGAACTCAGTTTGAGATGTCTGTCCAACAATGGAGGATTTCATGCTGAAAACACCATTTGA 930 49.78 MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQNSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAATDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNHTDLSSSRLGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRKSGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFAFQKYSGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLSNNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5298802 5300951 + Lsi07G005040.1 Lsi07g00504 666926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00504 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Lsi07g00504 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 298 - -
Lsi07g00504 309 Pfam Mitochondrial carrier protein 11 91 IPR018108 -
Lsi07g00504 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Lsi07g00504 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Lsi07g00504 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 298 - -
Lsi07g00504 309 Gene3D Mitochondrial carrier domain 12 304 IPR023395 -
Lsi07g00504 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Lsi07g00504 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Lsi07g00504 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Lsi07g00504 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Lsi07g00504 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Lsi07g00504 309 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Lsi07g00504 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Lsi07g00504 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02791 Lsi07g00504 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00504 Lsi-Chr7:5298802 Lsi07g01202 Lsi-Chr7:17509569 9.73E-50 dispersed
Lsi10g01410 Lsi-Chr10:18190591 Lsi07g00504 Lsi-Chr7:5298802 7.29E-08 dispersed
Lsi02g02791 Lsi-Chr2:34149266 Lsi07g00504 Lsi-Chr7:5298802 3.71E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00504 K15109 - csv:101222749 598.971