Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00504 | ATGGATTTCTGGCCGGAATTTCTCGCTAGCAGTTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGTGTCGCCGGCATCGTCTCCGGCTACCCACTCGACACTCTTCGCATCCGACAACAAAACTCCACCTCCGGCTCCGCCATCAGCGTCCTTCGTAACATCATGTCCAATGGCGGCCCCGCCGCCCTCTACAGAGGAATGGGAGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCATTGTTTTCCAGACCAACGCCGTGCTCTGCAGAGCGTTCGATCCAGCGGCGACAGACAACCGTCCACCGTCGTACAAGGCGGTAGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTTTAACACCGGTGGAGCTTGTGAAAATCCGTCTTCAATTACAGGATTTGGGTTCATCAAATCACACAGATCTGAGTTCATCTCGGCTCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGGCTATACAGAGGCTTAACAATCACAATGCTAAGAGATGCTCCTTCCCATTGCTTTTACTTTTGGACTTACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGCAGGAAATCCGGTCAAGAGACATTGAGAACGATGCTCGTAGCCGGAGGACTGGCCGGCGTCGCCAGTTGGGTTTGTTGTTACCCATTGGATGTGGTTAAAACCAGACTTCAAGCTCAATCGAAATTCGCGTTTCAAAAGTACAGTGGAATTATGGATTGTTTCTATAAGAGCGTGAAAGAAGAAGGGTACAGTGTTTTATGGCGTGGATTAGGAACCGCCATAGCTAGAGCTTTTGTAGTGAATGGAGCCATTTTTTCTGCTTATGAACTCAGTTTGAGATGTCTGTCCAACAATGGAGGATTTCATGCTGAAAACACCATTTGA | 930 | 49.78 | MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQNSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAATDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNHTDLSSSRLGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRKSGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFAFQKYSGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLSNNGGFHAENTI | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5298802 | 5300951 | + | Lsi07G005040.1 | Lsi07g00504 | 666926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00504 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 208 | 296 | IPR018108 | - | |
Lsi07g00504 | 309 | PANTHER | CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN | 1 | 298 | - | - | |
Lsi07g00504 | 309 | Pfam | Mitochondrial carrier protein | 11 | 91 | IPR018108 | - | |
Lsi07g00504 | 309 | Pfam | Mitochondrial carrier protein | 212 | 299 | IPR018108 | - | |
Lsi07g00504 | 309 | Pfam | Mitochondrial carrier protein | 109 | 198 | IPR018108 | - | |
Lsi07g00504 | 309 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 1 | 298 | - | - | |
Lsi07g00504 | 309 | Gene3D | Mitochondrial carrier domain | 12 | 304 | IPR023395 | - | |
Lsi07g00504 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 197 | IPR018108 | - | |
Lsi07g00504 | 309 | SUPERFAMILY | Mitochondrial carrier | 11 | 291 | IPR023395 | - | |
Lsi07g00504 | 309 | PRINTS | Mitochondrial carrier protein signature | 170 | 188 | IPR002067 | GO:0055085 | |
Lsi07g00504 | 309 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085 | |
Lsi07g00504 | 309 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085 | |
Lsi07g00504 | 309 | PRINTS | Mitochondrial carrier protein signature | 28 | 42 | IPR002067 | GO:0055085 | |
Lsi07g00504 | 309 | PRINTS | Mitochondrial carrier protein signature | 217 | 239 | IPR002067 | GO:0055085 | |
Lsi07g00504 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 10 | 92 | IPR018108 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g02791 | Lsi07g00504 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00504 | Lsi-Chr7:5298802 | Lsi07g01202 | Lsi-Chr7:17509569 | 9.73E-50 | dispersed | |
Lsi10g01410 | Lsi-Chr10:18190591 | Lsi07g00504 | Lsi-Chr7:5298802 | 7.29E-08 | dispersed | |
Lsi02g02791 | Lsi-Chr2:34149266 | Lsi07g00504 | Lsi-Chr7:5298802 | 3.71E-152 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00504 | K15109 | - | csv:101222749 | 598.971 |