Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00510 ATGGGTGCCGACATGTCGAACAACAATACTAATCGCCTTGCTTTCACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTTGGTCGGGGTGAGGTGGCGGAGAAGGGGGATGTTGAGATGGAGGAGGTGGACGACGGTAGCGGTGGAGCACGGAGAGATGATACGACGACGGCGGAAGTTAGTAGCGAGAATTCAGGACCGGTTAGGTCGAGATCGGACGACGACGGTTTCGACGGTGGAGGAGGACATGATGAGAATGAAGATGGGGTGGATCGTGGGTGTCATGTAAAGAGAAAGAAGAAATATCATCGCCATACAACGGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCGGATGAGAAGCAAAGGCAGCAACTTAGCAAGCGATTAGGACTTTCACCAAGACAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATTAAAGCTATTCAAGAGCGACATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGGATGAGAGAAATTTCTAAGAAAAAAATTGGTTGTCCAAACTGTGGAACTGCCGACGCTGGTGAAGACCACGTTGAGAAACTACGAGCAGCACTGGGAAAATACCCAGAAGCAGCGGCGTCGCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAACCGAAGGTGGTTAGATTTTTACACAGGAATTTTCGGGCTTGAAAAGTCAAGGATGATGGAGAAAGTTCATGAAGCTCTTGAAGAGCTCAAAACAATGGCTACCGCAGGCGACCCATTATGGGTCCACAGCGTGGAGACCGGCAGACAAATATTAAACTACGACGAGTACTTGAAAACTTTCAATCTCAACAATAATAATAATTCTAACATTACTCGTTGCCTAAAAACACACATTGAGGCCTCTCGAGAAACCGCCCTTGTTTTCATGGAGCCCTCTAGATTGGTTCATAGCTTCATGGATGAGGACTTTAACAATGTACATATTTTTTCTACCAGAAAAAATCAATGGAAGGAAATGTTTCCTTTCATGATCTCCAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAGGCTGCCAATTGGAATAATGGAGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTACCCACAAGAGAAATGTATTTCATTCGTCATTGCAAGCAGCTCGACGCTGAACAGTGGGCAATTGTCGATGTTTCGATCGAAAACATCGAAGATAACAATATCGATGCATCATTGGTGAAATACAGAAAACGTCCGTCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAGCATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGATTCAACTGGAGTTGCAACACTAGCGGGAAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTAGTGGGGAACAGAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAACCCATTGGAGTTATTTTGTGTGCAGTTTCTTCTCTCTGGTTGCCTCTTTCTCCTCATCTTCTCTTTGATTTCTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCTATGTTTGGTGGAGATAAAGCTAAGTCAATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACATTAGGATCAAAAGAGAGCAACAACATGTGGATCCTCCAAGACAGCTCCACAAACTCATCGGAATCCATGATAGTATACTCCGGAGTAGACGTTACCAGCATGCAGTCAGTGATGTCAGGTTGTGATTCCGGCAGCGTCACCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCAGGCCGCCCCTCCTCATCACTAGTGGAAAAGACGACAAAAGTTCCGACACTCATGGCGGCGTTCTACTGACCGCCGCCGTCCAAATCCTCACCGACACCTCTCCCTCTGCAAAACCCACCATGGAATCCGTTGAGTACGTTAAAAGCATCCTTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2295 45.27 MGADMSNNNTNRLAFTKDFFSSPALSLTLAGIFGRGEVAEKGDVEMEEVDDGSGGARRDDTTTAEVSSENSGPVRSRSDDDGFDGGGGHDENEDGVDRGCHVKRKKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREISKKKIGCPNCGTADAGEDHVEKLRAALGKYPEAAASPSYSSGNEQETRNRRWLDFYTGIFGLEKSRMMEKVHEALEELKTMATAGDPLWVHSVETGRQILNYDEYLKTFNLNNNNNSNITRCLKTHIEASRETALVFMEPSRLVHSFMDEDFNNVHIFSTRKNQWKEMFPFMISKAATVDVICNGEAANWNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGNRGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKAKSIANLAKGQDRGNSVTIQTLGSKESNNMWILQDSSTNSSESMIVYSGVDVTSMQSVMSGCDSGSVTILPSGFSILPDGADSRPPLLITSGKDDKSSDTHGGVLLTAAVQILTDTSPSAKPTMESVEYVKSILCCTLKNIRTSMCCEDD 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5338014 5348514 - Lsi07G005100.1 Lsi07g00510 666932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00510 764 Coils Coil 161 188 - -
Lsi07g00510 764 Pfam START domain 261 499 IPR002913 GO:0008289
Lsi07g00510 764 SMART HOX_1 104 166 IPR001356 GO:0003677
Lsi07g00510 764 SUPERFAMILY Bet v1-like 522 696 - -
Lsi07g00510 764 MobiDBLite consensus disorder prediction 74 101 - -
Lsi07g00510 764 SMART START_1 257 499 IPR002913 GO:0008289
Lsi07g00510 764 CDD START_ArGLABRA2_like 252 498 - -
Lsi07g00510 764 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Lsi07g00510 764 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Lsi07g00510 764 SUPERFAMILY Bet v1-like 250 500 - -
Lsi07g00510 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 759 IPR042160 -
Lsi07g00510 764 MobiDBLite consensus disorder prediction 38 64 - -
Lsi07g00510 764 Gene3D - 352 499 IPR023393 -
Lsi07g00510 764 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Lsi07g00510 764 MobiDBLite consensus disorder prediction 36 112 - -
Lsi07g00510 764 CDD homeodomain 105 160 IPR001356 GO:0003677
Lsi07g00510 764 Gene3D - 94 175 - -
Lsi07g00510 764 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Lsi07g00510 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 18 759 - -
Lsi07g00510 764 ProSiteProfiles START domain profile. 248 502 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00510 Lsi-Chr7:5338014 Lsi09g01939 Lsi-Chr9:28175003 0 dispersed
Lsi02g02804 Lsi-Chr2:34227280 Lsi07g00510 Lsi-Chr7:5338014 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25619 PF01852 START 2.80E-50 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00510 K09338 - csv:101221341 1283.09