Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00520 ATGGCGGAATCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGAGGGATCGAGAACAGAGGGATTTGAAACACCCAATTTACAGAGGCGTACGGAGGAGGAGTTGGGGCAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCACACGATGTGGCGGCGCTCAGTATCAAAGGTGATTCGGCAAAAGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTACCCCGGCCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCAGCGATGGTCGATTTCGATTCCACTACGGCGTTGTTTTCGTCGTCGAATGATGAAGAAGGGTCAGACGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTAGCGGCCGGGGAAATGGATTTCTGTGCAGTGTTTTCAGATCAGAGTACGACCCCGGTTACCTTCGACTGCCGCGATTGGGATTGA 612 51.96 MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGEMDFCAVFSDQSTTPVTFDCRDWD 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5483691 5484302 - Lsi07G005200.1 Lsi07g00520 666942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00520 203 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 191 - -
Lsi07g00520 203 SMART rav1_2 33 98 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 MobiDBLite consensus disorder prediction 13 32 - -
Lsi07g00520 203 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 9 191 - -
Lsi07g00520 203 MobiDBLite consensus disorder prediction 1 32 - -
Lsi07g00520 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677
Lsi07g00520 203 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Lsi07g00520 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00520 Lsi-Chr7:5483691 Lsi08g01086 Lsi-Chr8:19470778 1.16E-46 dispersed
Lsi11g00240 Lsi-Chr11:2429121 Lsi07g00520 Lsi-Chr7:5483691 1.68E-44 wgd
Lsi02g02820 Lsi-Chr2:34357667 Lsi07g00520 Lsi-Chr7:5483691 6.36E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25621 PF00847 AP2 9.40E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00520 K09286 - csv:101222354 360.147