Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00526 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCAGTTTGTTCTTCCTTCTATACTTCGCGGTTCTTCTTCAGGATCATTCCCTCTCTTCTTCTTATCCCACGCCCTTGAATTGTACGGACACAACCCGTTTATGCACCTCGTTTTTGGCCTTCAAGCCTCACCCAAATCAGACTCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTAACCGTCGAAGGAAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGCTCCTGTGCCTCTGGGTTGAAGAAATACATAACAAACACCACTTTTACCATCAAATCCAATCACGGCCATGTATATGATATAGTCATGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACAACCCGAATGGCGAGGAACGGTGCTGTTGTGTCTTTGAGATTGTTTTGTGCCTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGCGACACCATAGAGTCTCTGGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCAGCAATGTTACTGTGGGTGCTTTGTATTATATTCCCTTCAATTCGGTTCCTGGTGATCCTTATCCGTTGGAGACAGACATTTCTCCTGCTCCTACTCCAGCTCCTTCCTATACTCTGAACAATTTCTCAGATAATGCTCAGATCCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATCGTAGGTTATGCTTGCTTCAGGTGGTTGAAATGCTTTTCTAGATCAAGAAGTAGCCACCCCAAAGATCCCGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAGATTGGAAGCAAGCCAATGGGGAATCTACCGACAACCAGACCGCAATTCCAAAAGCCATTGAGAGCAATGTATTCGATGTAGACAAACCTGTGATTTTCTCATGCGAAGAAATCTTTTCCTCAACCGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTACTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTATTTCTTATTTATGAATATGCCCAAAAAGGTCCCCTCAAAAGTCATTTACATGATCCTCTGAACAAGGGTCATACACCATTATCTTGGATTATGAGACTCCAAATTGCTTTGGACGCTGCAAGAGGTCTCGAATACATTCATGAGCATACTAAAACTCATTATGTCCACAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACGAATGAGGGTGAAGCTACAGTAACCAAAGTTGTTGGTACATACGGTTATTTGGCTCCTGAATATTTGAGTAATGGTCTTGCGACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAAAAATCCCGAAAGACGTTCACTAGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCTACGAATATGGCAAGTCTGAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATTCAATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTATCACAGATCCTACTCTCTTCGATCGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTTTCAGTGGTCTTGTCCAAGGAAGATAG 2013 42.97 MFWSMNPVRIRSLFFLLYFAVLLQDHSLSSSYPTPLNCTDTTRLCTSFLAFKPHPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGHVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPSNVTVGALYYIPFNSVPGDPYPLETDISPAPTPAPSYTLNNFSDNAQIPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHPKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQANGESTDNQTAIPKAIESNVFDVDKPVIFSCEEIFSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKSHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPTNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5564512 5569818 - Lsi07G005260.1 Lsi07g00526 666948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00526 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Lsi07g00526 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Lsi07g00526 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00526 670 Pfam Protein tyrosine and serine/threonine kinase 364 640 IPR001245 GO:0004672|GO:0006468
Lsi07g00526 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Lsi07g00526 670 SMART serkin_6 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00526 670 Pfam LysM domain 159 196 IPR018392 -
Lsi07g00526 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Lsi07g00526 670 Gene3D LysM domain 154 207 IPR036779 -
Lsi07g00526 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lsi07g00526 670 CDD LysM 158 201 IPR018392 -
Lsi07g00526 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Lsi07g00526 670 PANTHER BNAA06G02020D PROTEIN 36 670 - -
Lsi07g00526 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Lsi07g00526 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 36 670 IPR044812 GO:0019199|GO:0045087
Lsi07g00526 670 SMART LysM_2 158 202 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01045 Lsi-Chr1:8661066 Lsi07g00526 Lsi-Chr7:5564512 1.49E-69 dispersed
Lsi04g00578 Lsi-Chr4:5272562 Lsi07g00526 Lsi-Chr7:5564512 5.30E-53 dispersed
Lsi07g00526 Lsi-Chr7:5564512 Lsi11g01430 Lsi-Chr11:22849358 2.02E-93 dispersed
Lsi10g01250 Lsi-Chr10:16733953 Lsi07g00526 Lsi-Chr7:5564512 3.67E-36 dispersed
Lsi07g00526 Lsi-Chr7:5564512 Lsi11g00260 Lsi-Chr11:2621815 5.52E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83770 PF07714 PK_Tyr_Ser-Thr 3.20E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00526 - - csv:101213624 1250.34