Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00531 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATTATCGGTAACGACGGTTCTATTTGGGCTCAGAGCAACGGTTTCCCTCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGGTTGCACCTTGGTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGTGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAAACCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 45.2 MSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSIWAQSNGFPQYKPEEISAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5651707 5653751 - Lsi07G005310.1 Lsi07g00531 666953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00531 131 CDD PROF 2 131 IPR005455 GO:0003779
Lsi07g00531 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Lsi07g00531 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Lsi07g00531 131 SMART prof_2 1 131 IPR005455 GO:0003779
Lsi07g00531 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Lsi07g00531 131 PANTHER PROFILIN 1 131 - -
Lsi07g00531 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Lsi07g00531 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lsi07g00531 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Lsi07g00531 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02980 Lsi07g00531 CCT
Lsi02g02980 Lsi07g00531 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00531 Lsi-Chr7:5651707 Lsi11g00217 Lsi-Chr11:2219045 2.27E-68 dispersed
Lsi11g00216 Lsi-Chr11:2216057 Lsi07g00531 Lsi-Chr7:5651707 2.23E-77 wgd
Lsi02g02980 Lsi-Chr2:35886922 Lsi07g00531 Lsi-Chr7:5651707 9.85E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00531 K05759 - csv:101218089 261.151