Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00562 ATGAGTCGGGAGCAGAAGCGGGGAAAGCAGGACAGAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGTGATGATCCATTATCCCCTTCACGTCCCTGTTATTGGTCAATCATTTGTTCATCTTCCTATGCTGGTTCTGCCTTTAACTGGTGTCTTGCAAATCTTGTCACATAGTTGTCAAACATGTTTCCAGATCTTTAGACTAAAGGAGCCTTGTCACGTTCCAAATGGTTGTTCAGAAAGAAAAAAGACAGTTCCATACGGGAAAACTGGATCTGGCCACTCCAATAATATATTATGCTTAATTAATGGATTACTAACAGCATCATATCCTCCAGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACTGATTCCTGTTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCACCGAGTGGGGCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCACAACCGAAAGTTCTTCGTTTGAACCTGGTAGGGTCTCCAAAGAAGGAACCAGAAGTGCCCTCTCCGTCACCTTCTGATATAGATGAAGGGTCTGAAAGCCATCAAAAAGAAAATAATGATCCTTTAGATTTCATAAGGGGACCAGTTGTGACCCCCAGCAGCAGTCCTGAGTTGGGCACACCTTTTACCGCTACCGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAAAATAAAGAACTAGACGCTGCTAGTTCAGACTCGGATATAGAGAATTTATCTGTATCTTCTGCGAGTTTAAGGTTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATAAGTGGAAGATCACAGAGATGTGATGATAGGAATCAAGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTTCTAAACTTGACAGAGAATCAAGTATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGGGGCGTACGAGATGCAGTTTCATTATCCAGGAACACGCCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTTTTGGCTGAAGGAGGATATGGATCTGTTCACAGAGGGGTACTCCCAGATGGACAGGTGGTTGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGCGCACAGCATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCACTGGATTCTCATTTATATGGTGCAATGGAAGAAGCCTCACATTTCCTCCTACACTTATGTGAACCATTTCGAGGTGCATTTTCAGGACGCCAACAAGAGCCACTAGAATGGTCTGCACGGCAAAAAATTGCTGTGGGAGCTGCAAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATCACCCATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCTGATGGAGATACCGGTGTTGAAACAAGAGTTATTGGAACATTCGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTAGACCTTAGTAGACCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGCCCCCTGTTGGATGAATTTCTTATTGATGAACTGATTGATCCAAGGTTGGGAAATAGCTTTGCAGAGCATGAAGTGTACTGTATGCTGCATGCCGCATCGTTATGCATCCGAAGAGATCCTAACGCAAGGCCTCGTATGTCACAGGTTTTACGCATTCTGGAAGGCGACCTCGTCATGGATGCTAATTACTTGTCAACTCCCGGATACGATGTGGGAAATCGGAGTGGTCGGATGTGGACCGAGCAGCAGCAGCAGCAGCAGCAAAGCTACAGTGGCTCATTATCAGATGAGACTCTAGAGAGGTTCAATGAAAAAGTCTGTGTTGAGAGTTTAAGACCAGGTTACTGGGAAAGAGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAA 2595 44.05 MSREQKRGKQDRGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSVMIHYPLHVPVIGQSFVHLPMLVLPLTGVLQILSHSCQTCFQIFRLKEPCHVPNGCSERKKTVPYGKTGSGHSNNILCLINGLLTASYPPGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEVPSPSPSDIDEGSESHQKENNDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDRNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGGVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGAMEEASHFLLHLCEPFRGAFSGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLGNSFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGNRSGRMWTEQQQQQQQSYSGSLSDETLERFNEKVCVESLRPGYWERDKTRRTSSGSDL 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5966015 5972406 + Lsi07G005620.1 Lsi07g00562 666984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00562 864 MobiDBLite consensus disorder prediction 265 345 - -
Lsi07g00562 864 MobiDBLite consensus disorder prediction 808 829 - -
Lsi07g00562 864 MobiDBLite consensus disorder prediction 398 459 - -
Lsi07g00562 864 ProSiteProfiles Protein kinase domain profile. 495 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00562 864 CDD STKc_IRAK 501 789 - -
Lsi07g00562 864 Pfam Protein tyrosine and serine/threonine kinase 499 785 IPR001245 GO:0004672|GO:0006468
Lsi07g00562 864 MobiDBLite consensus disorder prediction 432 446 - -
Lsi07g00562 864 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 60 - -
Lsi07g00562 864 PANTHER OS01G0253100 PROTEIN 146 822 IPR045271 GO:0004714|GO:0006468
Lsi07g00562 864 MobiDBLite consensus disorder prediction 810 829 - -
Lsi07g00562 864 Gene3D Phosphorylase Kinase; domain 1 467 570 - -
Lsi07g00562 864 MobiDBLite consensus disorder prediction 310 344 - -
Lsi07g00562 864 PANTHER OS01G0253100 PROTEIN 15 60 IPR045271 GO:0004714|GO:0006468
Lsi07g00562 864 SUPERFAMILY Protein kinase-like (PK-like) 479 801 IPR011009 -
Lsi07g00562 864 ProSitePatterns Tyrosine protein kinases specific active-site signature. 638 650 IPR008266 GO:0004672|GO:0006468
Lsi07g00562 864 Gene3D Transferase(Phosphotransferase) domain 1 573 797 - -
Lsi07g00562 864 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 146 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00562 Lsi-Chr7:5966015 Lsi11g00260 Lsi-Chr11:2621815 7.21E-95 dispersed
Lsi04g00757 Lsi-Chr4:7044522 Lsi07g00562 Lsi-Chr7:5966015 2.42E-86 transposed
Lsi04g01631 Lsi-Chr4:23798960 Lsi07g00562 Lsi-Chr7:5966015 8.02E-08 transposed
Lsi08g00507 Lsi-Chr8:12985901 Lsi07g00562 Lsi-Chr7:5966015 8.56E-24 transposed
Lsi06g00265 Lsi-Chr6:2982630 Lsi07g00562 Lsi-Chr7:5966015 1.59E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83773 PF07714 PK_Tyr_Ser-Thr 1.60E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00562 - - csv:101206876 1326.61