Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00563 ATGGAGGGAAAGCAGAAGTTCTTCCACGGAACGCTTGAGGTTACCGTCTTCCATGCAACGGCATACACCCCGCCATCACCTCTGGATTGCATATTTGCTGGGGGAAAGCGTAGCTATGTGACTATCAAGATAGACGACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACGTTCCGAGTTCTATGCGCACATCCATTGACTTCTACTGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCTACATCCAAGCCCAACAGATTCTAAAAGAAGCAAGTTTTATCAACGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCGGAGGTCAAACTTCGATTCATGCTATGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACACTTCCTTTAAGATCCAACTGTCATGTGACTCTATATCAAGATGCTCACCACCTCCATACTTTTCAACCTCCATTTCATGGTTCGAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACTGATGTACCCTATGGTTTAGGAGTAAAGCTTGGAGAGTTGTTGAAGCAGAAAGCAGAGGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCCCTTCCCATCATCAAGAATGCCGGGATAATGAACACACATGATGAAGATGCTCGGGCATATTTCTTTCACTCAAAAGTCATATGTAGGTTGTGCCCCAAATTACATCCTATGTCTCCACCGATTTTCTCTCATCATCAGAAAACCATAATTGTAGATGCTCAAACTCACATCAATGCAAGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTGGATCTTTGTGATGGTCGCTACGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCTCACTGTTGTGATTTCTATCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCAGCTTGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTCATTGTTAGTACCGACAAGCATCTTATTAAAATTGATGCCCCAACTCGAATCAAACACAAACCCACAAAAGGACTGGAATGTGCAAGTTTTTCGATCAATTGACCATTTGTCTGCCAGCCAAATGTTCAGAAACATGACCATTGAACGAACCATCCATGAAGCTTATGTCGAAGCTATCAGGCGAGCTGAGAGATTTATATATATCGAAAACCAATATTTTATTGGAGGGTGTCATTTGTGGGACAAAGATCAACACTGTGGATGCACGAATTTGATACCAATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGATTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGTCCATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGAGGAAGTGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTAATTGGATCCGCAAACGTAAACCAGAGATCCATGGACGGAGAGCGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAACGACGGAGAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCACTTTGGTACGAACATACACAACGATTCGAAGAACTGTTCTTAAACCCCGAAAGCTTGGAATGCGTTCAAAGGGTTCGTTCAATAGGAGATAAATCGTGGAAAATTTACAGTGGAGAAGAAATTGAAGACATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAGGATGGGTCGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACCAAATGCCCCATTAAAGGAAGAAGATCAATGATGTTGCCTCCCATTTTCACAACCTAG 2280 42.81 MEGKQKFFHGTLEVTVFHATAYTPPSPLDCIFAGGKRSYVTIKIDDKEVAQTSHEHDRVWNQTFRVLCAHPLTSTVTITMKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKPSPEVKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATLPLRSNCHVTLYQDAHHLHTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDVPYGLGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFFHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTNPQKDWNVQVFRSIDHLSASQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKVHPRDYLNFFCLANREEERKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGEELPNGRDISTFRLSLWYEHTQRFEELFLNPESLECVQRVRSIGDKSWKIYSGEEIEDMKGVHLVTYPVKVKEDGSMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5984985 5988123 + Lsi07G005630.1 Lsi07g00563 666985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00563 759 SMART pld_4 604 631 IPR001736 GO:0003824
Lsi07g00563 759 SMART pld_4 298 333 IPR001736 GO:0003824
Lsi07g00563 759 Pfam C2 domain 10 109 IPR000008 -
Lsi07g00563 759 Pfam Phospholipase D C terminal 676 748 IPR024632 -
Lsi07g00563 759 Gene3D C2 domain 2 129 IPR035892 -
Lsi07g00563 759 PIRSF PLD_plant 2 759 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi07g00563 759 Gene3D Endonuclease Chain A 444 651 - -
Lsi07g00563 759 Pfam Phospholipase D Active site motif 605 631 IPR001736 GO:0003824
Lsi07g00563 759 Pfam Phospholipase D Active site motif 298 333 IPR001736 GO:0003824
Lsi07g00563 759 PANTHER PHOSPHOLIPASE D 5 759 IPR015679 -
Lsi07g00563 759 PANTHER PHOSPHOLIPASE D ALPHA 4 5 759 - -
Lsi07g00563 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Lsi07g00563 759 SUPERFAMILY Phospholipase D/nuclease 146 407 - -
Lsi07g00563 759 Gene3D Endonuclease Chain A 168 430 - -
Lsi07g00563 759 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 126 IPR035892 -
Lsi07g00563 759 SUPERFAMILY Phospholipase D/nuclease 422 688 - -
Lsi07g00563 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00563 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101206396 1523.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00563 Lsi-Chr7:5984985 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g00563 Lsi-Chr7:5984985 Lsi02g02718 Lsi-Chr2:33509587 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g191 . . . Bda10g00858 . Bpe10g00689 . . . . Cma01g00068 . Car01g00054 . Sed06g2216 . . Bhi01g03327 Tan04g2749 Cmetu04g0608 Lac12g2427 Hepe02g1477 . . Cla07g01298 Cam07g1199 Cec07g1483 Cco07g1442 Clacu07g1366 Cmu07g1343 Cre07g1725 . . . . . . Chy04g00644 . . . . . . . . Bma15g00335 . Cmo01g00070 . . . . . Cpe02g01720 . . . . . . . . . . . . . . . Lsi07g00563 Csa03g04088 . Cme04g01195
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012312 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00563 Lsi_Chr07 FPKM 0.377643 0.453389 0.0 0.0 5.836561 3.201141 6.731474 0.0 0.0 0.0