Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00563 ATGGAGGGAAAGCAGAAGTTCTTCCACGGAACGCTTGAGGTTACCGTCTTCCATGCAACGGCATACACCCCGCCATCACCTCTGGATTGCATATTTGCTGGGGGAAAGCGTAGCTATGTGACTATCAAGATAGACGACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACGTTCCGAGTTCTATGCGCACATCCATTGACTTCTACTGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCTACATCCAAGCCCAACAGATTCTAAAAGAAGCAAGTTTTATCAACGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCGGAGGTCAAACTTCGATTCATGCTATGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACACTTCCTTTAAGATCCAACTGTCATGTGACTCTATATCAAGATGCTCACCACCTCCATACTTTTCAACCTCCATTTCATGGTTCGAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACTGATGTACCCTATGGTTTAGGAGTAAAGCTTGGAGAGTTGTTGAAGCAGAAAGCAGAGGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCCCTTCCCATCATCAAGAATGCCGGGATAATGAACACACATGATGAAGATGCTCGGGCATATTTCTTTCACTCAAAAGTCATATGTAGGTTGTGCCCCAAATTACATCCTATGTCTCCACCGATTTTCTCTCATCATCAGAAAACCATAATTGTAGATGCTCAAACTCACATCAATGCAAGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTGGATCTTTGTGATGGTCGCTACGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCTCACTGTTGTGATTTCTATCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCAGCTTGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTCATTGTTAGTACCGACAAGCATCTTATTAAAATTGATGCCCCAACTCGAATCAAACACAAACCCACAAAAGGACTGGAATGTGCAAGTTTTTCGATCAATTGACCATTTGTCTGCCAGCCAAATGTTCAGAAACATGACCATTGAACGAACCATCCATGAAGCTTATGTCGAAGCTATCAGGCGAGCTGAGAGATTTATATATATCGAAAACCAATATTTTATTGGAGGGTGTCATTTGTGGGACAAAGATCAACACTGTGGATGCACGAATTTGATACCAATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGATTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGTCCATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGAGGAAGTGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTAATTGGATCCGCAAACGTAAACCAGAGATCCATGGACGGAGAGCGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAACGACGGAGAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCACTTTGGTACGAACATACACAACGATTCGAAGAACTGTTCTTAAACCCCGAAAGCTTGGAATGCGTTCAAAGGGTTCGTTCAATAGGAGATAAATCGTGGAAAATTTACAGTGGAGAAGAAATTGAAGACATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAGGATGGGTCGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACCAAATGCCCCATTAAAGGAAGAAGATCAATGATGTTGCCTCCCATTTTCACAACCTAG 2280 42.81 MEGKQKFFHGTLEVTVFHATAYTPPSPLDCIFAGGKRSYVTIKIDDKEVAQTSHEHDRVWNQTFRVLCAHPLTSTVTITMKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKPSPEVKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATLPLRSNCHVTLYQDAHHLHTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDVPYGLGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFFHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTNPQKDWNVQVFRSIDHLSASQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKVHPRDYLNFFCLANREEERKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGEELPNGRDISTFRLSLWYEHTQRFEELFLNPESLECVQRVRSIGDKSWKIYSGEEIEDMKGVHLVTYPVKVKEDGSMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5984985 5988123 + Lsi07G005630.1 Lsi07g00563 666985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00563 759 SMART pld_4 604 631 IPR001736 GO:0003824
Lsi07g00563 759 SMART pld_4 298 333 IPR001736 GO:0003824
Lsi07g00563 759 Pfam C2 domain 10 109 IPR000008 -
Lsi07g00563 759 Pfam Phospholipase D C terminal 676 748 IPR024632 -
Lsi07g00563 759 Gene3D C2 domain 2 129 IPR035892 -
Lsi07g00563 759 PIRSF PLD_plant 2 759 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi07g00563 759 Gene3D Endonuclease Chain A 444 651 - -
Lsi07g00563 759 Pfam Phospholipase D Active site motif 605 631 IPR001736 GO:0003824
Lsi07g00563 759 Pfam Phospholipase D Active site motif 298 333 IPR001736 GO:0003824
Lsi07g00563 759 PANTHER PHOSPHOLIPASE D 5 759 IPR015679 -
Lsi07g00563 759 PANTHER PHOSPHOLIPASE D ALPHA 4 5 759 - -
Lsi07g00563 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Lsi07g00563 759 SUPERFAMILY Phospholipase D/nuclease 146 407 - -
Lsi07g00563 759 Gene3D Endonuclease Chain A 168 430 - -
Lsi07g00563 759 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 126 IPR035892 -
Lsi07g00563 759 SUPERFAMILY Phospholipase D/nuclease 422 688 - -
Lsi07g00563 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00563 Lsi-Chr7:5984985 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g00563 Lsi-Chr7:5984985 Lsi02g02718 Lsi-Chr2:33509587 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00563 K01115 - csv:101206396 1523.45