Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00564 CTCATCACAGCTGCAGCTTTCATATCTTCCACAATCATAATCCTCAAAAGCTTCATCATCCCCACCACACCACCATCATCTTCAAACTCCTTCATCTCCTCCAACCATCCTTCACTTCCTTCCGGCTCCCTCGGTCTCCCCTTCGTCGGCGAAACCCTCCACTTCGTCTCTTCTGCTTACTCTCATCGCCCCGACACCTTCATGGACACACGTCGCCGACGTGCAACAATAGTTTCAACTGATGCTGAAGTGAATAGGTTTATTCTACAAAGTGATGCAAAGGTTTTTGTGCCATCTTATCCAAAATCTGTGAGAGAGTTGATGGGAAAATCTTCTATATTGCTTATCAATGGCTCTTTGCATAGAAGAATTCATGGCCTTATTGGAGCCTTTTTCAAGTCATCTCATCTCAAAGCTCAAATAACCATTGACATGCAGAAATATCTTCATAAATCCATCTCTACTTGGACTAATACTTGTCAACACAATCCTATCTACATTCAAGATGAAGCCAAAAATGCCAAAAGGAAAATGGTTAAGTTAGTGCAAGAAATAATAGAAGGTAGAAGAAAGAAGATGATGAGGGAGAAATTTGATAATAATGAAGTGATCCCAATTAATGATGTTGTGGATGTTTTGGTGAATGATGGAAGCCAACAAATTACAGATGAACTAATAGCAGATAATATGATTGATATGATGATTCCAGGCCAAGATTCTGTCCCAATTCTTATCACTTTGGCCATTAAATACCTTTCTGATTCTCCATCTGCCCTTCAACAATTACTGACGACGTTAGAATCTAAAACTGAAGAAAACATGGAATTGAAAAGACTGAAAACTCAGCTTGGAGAATCATTGAAGTGGAGTGATTACTTGTCTTTACCATTTACACAAAATGTCATAACGGAGACGTTAAGAATAGGAAACATAATAACAGGAGTGATGAGAAAGGCGATGAAAGACATTGAAATAAAAGGGTATTTAATACCTAAAGGATGGTGCGTCCTTGCATATATTAGGTCAGTTCATGTCGATGAAAATCACTTTGAAAGTCCTTACTATTTCAATCCATGGAGATGGCAAGATAAAGACTCGAATAACTCCAATTTTACTCCTTTTGGAGGAGGACAAAGGTGGGTGGCTGAAGAAGACAATATTATCAACTTCCCAACAGTAAGAATGAAGAAGAGAATGGCAATTTGGGTAAAGAAGAGAGAGCATTAA 1227 38.63 LITAAAFISSTIIILKSFIIPTTPPSSSNSFISSNHPSLPSGSLGLPFVGETLHFVSSAYSHRPDTFMDTRRRRATIVSTDAEVNRFILQSDAKVFVPSYPKSVRELMGKSSILLINGSLHRRIHGLIGAFFKSSHLKAQITIDMQKYLHKSISTWTNTCQHNPIYIQDEAKNAKRKMVKLVQEIIEGRRKKMMREKFDNNEVIPINDVVDVLVNDGSQQITDELIADNMIDMMIPGQDSVPILITLAIKYLSDSPSALQQLLTTLESKTEENMELKRLKTQLGESLKWSDYLSLPFTQNVITETLRIGNIITGVMRKAMKDIEIKGYLIPKGWCVLAYIRSVHVDENHFESPYYFNPWRWQDKDSNNSNFTPFGGGQRWVAEEDNIINFPTVRMKKRMAIWVKKREH 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5994952 6002610 - Lsi07G005640.1 Lsi07g00564 666986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00564 408 PANTHER CYTOCHROME P450 26 21 199 - -
Lsi07g00564 408 PANTHER CYTOCHROME P450 26 174 380 - -
Lsi07g00564 408 SUPERFAMILY Cytochrome P450 36 406 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00564 408 Pfam Cytochrome P450 154 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00564 408 Gene3D Cytochrome P450 29 380 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00564 408 Coils Coil 259 279 - -
Lsi07g00564 408 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90D1 21 199 - -
Lsi07g00564 408 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90D1 174 380 - -
Lsi07g00564 408 Coils Coil 171 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00564 Lsi-Chr7:5994952 Lsi07g00205 Lsi-Chr7:2230672 2.77E-59 dispersed
Lsi01g00638 Lsi-Chr1:5136644 Lsi07g00564 Lsi-Chr7:5994952 8.12E-09 transposed
Lsi04g00972 Lsi-Chr4:10286056 Lsi07g00564 Lsi-Chr7:5994952 1.45E-64 transposed
Lsi02g02944 Lsi-Chr2:35584038 Lsi07g00564 Lsi-Chr7:5994952 2.76E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00564 K12638 - csv:101212581 637.106