Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00577 ATGATAAAAAGTTCGTTGTTTCAACAACAAGCTCAAGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCCGGCCAGTATTTTTCTACTCCACCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAAACGCTTATGGCGACGAATAGATTTGTATGCGAGATTTGTGGGAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGTTAAAGCAAAGAGCAAACAAAGAAGTAATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCATCAAGGGCATTAGGGGATTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAAATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAGCCATTACATCAAACCCAATATTAATTACCAATAATAATAATTATAATAATAATAATAATAATAATTATAATAATAATCAAAACCACCTTCTTCCTCCACTTTCTTCCACTCCCATTTCTCACTTAAACTTCCAAATCACACAACAAACCCATTTCAACCCTCCCTTAGATCATTTTTCTCTAAAAAAAGAACACCAATTAATAAATAATAATATTCCCCCATGGTTAGGCTGTCCTAATTCAAGCTCAAATAATAATAATCATCCAATTATAAACCCTAATCACAATCATAATCTTGCTCCCACTTCCCTTCATCTAATTCCAAGTGCTTCCCCTTCTTCTTCACACATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAATAATACTGAGCCACCACACACAATCACCACCACCACCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACAAATTGTAATTTTGGCCTTAATTTGTCCTCCTCATCCTCCTCCTCACGTGACATTCATCAGCAGCAGAATCAGATTTTGATGATAATGGATAGTACTACTAATAGTTGTAGTACTACTGAAGCTGCAGGGCTTTCTCATGCACTGCCATTCTACAGGAATAATTTTCAAGGAGGGGCTTCTTTTGAATTAGACCAATTTGGAGGGGTTTTCAAGAAAACAACAGATTCAAGTGATCAACAAGCTGGGCTTAGTACAAGAGATTTCTTGGGGTTAAGAGCTATTTCTCATACTGAGTTTTTGACTAATATTGCAGCTGCTGGTTATAATAATTGCATCAATAATCATAATAATAATGTTGCTGCTCAAACTCCTCAAACTCAAATTCAAAATCAATCCACCTGGCAAGGTTAG 1566 37.1 MIKSSLFQQQAQAMEENLSNLTSASGEASACSGNHSDQIPTNYSGQYFSTPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPILITNNNNYNNNNNNNYNNNQNHLLPPLSSTPISHLNFQITQQTHFNPPLDHFSLKKEHQLINNNIPPWLGCPNSSSNNNNHPIINPNHNHNLAPTSLHLIPSASPSSSHMSATALLQKAAQMGATMSNNTEPPHTITTTTNNNNNNNNNNNNNNNNNNTNCNFGLNLSSSSSSSRDIHQQQNQILMIMDSTTNSCSTTEAAGLSHALPFYRNNFQGGASFELDQFGGVFKKTTDSSDQQAGLSTRDFLGLRAISHTEFLTNIAAAGYNNCINNHNNNVAAQTPQTQIQNQSTWQG 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6115656 6118899 - Lsi07G005770.1 Lsi07g00577 666999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00577 521 Gene3D Classic Zinc Finger 139 220 - -
Lsi07g00577 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lsi07g00577 521 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Lsi07g00577 521 MobiDBLite consensus disorder prediction 351 404 - -
Lsi07g00577 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 486 - -
Lsi07g00577 521 Gene3D Classic Zinc Finger 81 108 - -
Lsi07g00577 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 486 - -
Lsi07g00577 521 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Lsi07g00577 521 SMART c2h2final6 127 157 IPR013087 -
Lsi07g00577 521 SMART c2h2final6 162 182 IPR013087 -
Lsi07g00577 521 SMART c2h2final6 85 107 IPR013087 -
Lsi07g00577 521 MobiDBLite consensus disorder prediction 41 68 - -
Lsi07g00577 521 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01357 Lsi-Chr1:11741008 Lsi07g00577 Lsi-Chr7:6115656 1.06E-112 dispersed
Lsi07g00577 Lsi-Chr7:6115656 Lsi10g00083 Lsi-Chr10:1365870 3.13E-118 dispersed
Lsi02g02929 Lsi-Chr2:35493922 Lsi07g00577 Lsi-Chr7:6115656 2.68E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25626 PF00096 zf-C2H2 0.0023 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00577 K25870 - csv:101204728 692.189