Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00587 ATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGTAAATCCTGGTCATGTCGAATTCACACGGCTAAAGTTAGTGACGGACACGGTAAATTTATTCTCTGCATCGTCCCCTGAGTCAGGTTCTATTGGTAATGGTAGTTGCCATGATTTTAATGGTATAGTTGACAGCATAACTGTGTCACAACCGACTGATAATGGTCAAGGTATAGACAGCTTTTGGGGGTTGTTGCCGAAGAATGGCACGAATTTGAATGTAGATAAGGAAGATTCATCCTTAGCTACTCTGGATGACCCTGATGAAATGATAGACGGCCGGTTGTTTGCTATTGATGGCGGTTCAAGTATTAATGTGCAAGAAGTTGTCAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCTAAGGCTATCATCTTGGTGGAATCAGGGAAGATTCCTACTAGTGAACTTATTGTGGCGACGGTAAGCCCAGATTTAGAAGTATCTGCATCGTCGGAGCTAAACGTCCCTGCAGTAGTTTTCCAATCGAAAGGTGGGGATAGTGTTCATAAAGGCATTCGTAGTGTCTTTGAACGCGATTGTATCCCCCTTTGGGGGTCCGTATCAATTTGTGGTAGAAGACCAGAAATGGAGGATGCAATTGCTGCCGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTACGAAATGGTTTGCTGAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCGAGAGCGTATACACTTGGCACTAGCTGAAGAGATAAGAGGATTTAAACAAAATCTAAATAATGGAAGCAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTTAACAATTGCTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGTAGAACAGTCAGTGGGAGCAGTGGAGATCTTTCCGATACAAGCTTCGAGCCTGTTGCCCCGGAAACTGTTGGCTCTACAGCTGTTGTTGCCTTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCTATGGCTCTATCGGTCGATCACAAACCAAATCGCGAAGATGAATATGCCAGGATTGAATCATCTGGAGGCAAAGTCATCCAGTGGAATGGACATCGTGTGTTCGGAGTGCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATTATTCCCGATCCAGAAGTCATGTTCGTTCCTCGTGCAAAAGAAGACGAATGTCTTATTTTAGCCAGCGACGGACTGTGGGATGTGATGACAAATGAGGAAGTCTGTGAAGTAGCTCGAAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCGTCATCTCTCGCTGATCGGGGCACAGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTCATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 44.07 MMEEMSPAVSLTLSLGNPKSDSSVNPGHVEFTRLKLVTDTVNLFSASSPESGSIGNGSCHDFNGIVDSITVSQPTDNGQGIDSFWGLLPKNGTNLNVDKEDSSLATLDDPDEMIDGRLFAIDGGSSINVQEVVKIGDVSNGHIVAKAIILVESGKIPTSELIVATVSPDLEVSASSELNVPAVVFQSKGGDSVHKGIRSVFERDCIPLWGSVSICGRRPEMEDAIAAVPCFAKIPIKMLVRNGLLNGMGQSLTHLNSHFFGVYDGHGGPQVADYCRERIHLALAEEIRGFKQNLNNGSNGENWQQDWERTFNNCFLRVDDEIEGKVGRTVSGSSGDLSDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6239778 6242705 - Lsi07G005870.1 Lsi07g00587 667009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00587 536 MobiDBLite consensus disorder prediction 1 24 - -
Lsi07g00587 536 PANTHER PROTEIN PHOSPHATASE 2C 16 112 536 - -
Lsi07g00587 536 SUPERFAMILY PP2C-like 200 527 IPR036457 -
Lsi07g00587 536 Gene3D - 195 536 IPR036457 -
Lsi07g00587 536 SMART PP2C_4 198 524 IPR001932 -
Lsi07g00587 536 CDD PP2Cc 210 526 IPR001932 -
Lsi07g00587 536 Pfam Protein phosphatase 2C 236 519 IPR001932 -
Lsi07g00587 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169
Lsi07g00587 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Lsi07g00587 536 PANTHER ALPHABET, ISOFORM E-RELATED 112 536 - -
Lsi07g00587 536 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02989 Lsi-Chr2:35976897 Lsi07g00587 Lsi-Chr7:6239778 5.59E-58 dispersed
Lsi05g00087 Lsi-Chr5:1595355 Lsi07g00587 Lsi-Chr7:6239778 1.72E-73 dispersed
Lsi05g01287 Lsi-Chr5:20670836 Lsi07g00587 Lsi-Chr7:6239778 1.87E-75 dispersed
Lsi06g00214 Lsi-Chr6:2441048 Lsi07g00587 Lsi-Chr7:6239778 1.30E-72 dispersed
Lsi07g00587 Lsi-Chr7:6239778 Lsi08g00854 Lsi-Chr8:16959074 4.19E-175 dispersed
Lsi07g00587 Lsi-Chr7:6239778 Lsi02g01331 Lsi-Chr2:17811663 1.85E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00587 K14497 - csv:101203499 1023.85