Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00592 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGATCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGTTCCTAAAGCAAAAGCTATTGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTAATGCATCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTTCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCGAAGTTGAGGAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAAGTAAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACTACGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAAGCAGAGAGAATTGCAAAGATGGCAGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCTCGTCAGTATGACACGAAAATGAACGAGTTACTTTCGGCTGATGGACAAGATTTCTTCACATCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCTACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTTCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAAGACCAACGTATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACACCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCCGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGATATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCCGTTAGAATTCTTGTAAAGCGTGATGAGCTGACTTTGGAAGGTATCAAGCAGTTCTATGTTAATGTTGACAAGGAAGACTGGAAGCTTGAGACTCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTCGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGGAGCCGTGACCACACTGTGTCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCAAGGGTTCTGATTACCACTGATCTATTGGCTCGTGGTATCGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAACTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTCGACATTCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTGCTGTGA 2046 43.79 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRVPKAKAIVAAISNNQSSAPAKLNASADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6285937 6296070 + Lsi07G005920.1 Lsi07g00592 667014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00592 681 SUPERFAMILY Winged helix DNA-binding domain 110 192 IPR036390 -
Lsi07g00592 681 CDD DEADc_EIF4A 313 510 - -
Lsi07g00592 681 Gene3D - 110 197 IPR036388 -
Lsi07g00592 681 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi07g00592 681 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lsi07g00592 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 662 IPR027417 -
Lsi07g00592 681 MobiDBLite consensus disorder prediction 87 113 - -
Lsi07g00592 681 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lsi07g00592 681 Pfam Helicase conserved C-terminal domain 534 642 IPR001650 -
Lsi07g00592 681 Gene3D - 298 516 IPR027417 -
Lsi07g00592 681 SMART helicmild6 561 642 IPR001650 -
Lsi07g00592 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Lsi07g00592 681 SMART ultradead3 327 524 IPR014001 -
Lsi07g00592 681 MobiDBLite consensus disorder prediction 1 27 - -
Lsi07g00592 681 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi07g00592 681 Gene3D - 517 681 IPR027417 -
Lsi07g00592 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 509 IPR014001 -
Lsi07g00592 681 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lsi07g00592 681 SMART sant 4 59 IPR001005 -
Lsi07g00592 681 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi07g00592 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 681 IPR001650 -
Lsi07g00592 681 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 291 681 - -
Lsi07g00592 681 Pfam DEAD/DEAH box helicase 333 494 IPR011545 GO:0003676|GO:0005524
Lsi07g00592 681 CDD SF2_C_DEAD 521 651 - -
Lsi07g00592 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lsi07g00592 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Lsi07g00592 681 PANTHER RNA HELICASE 291 681 - -
Lsi07g00592 681 Gene3D - 8 86 - -
Lsi07g00592 681 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00019 Lsi-Chr3:367682 Lsi07g00592 Lsi-Chr7:6285937 1.14E-06 dispersed
Lsi03g01162 Lsi-Chr3:21973492 Lsi07g00592 Lsi-Chr7:6285937 2.16E-175 dispersed
Lsi03g01960 Lsi-Chr3:31019511 Lsi07g00592 Lsi-Chr7:6285937 9.02E-61 dispersed
Lsi07g00592 Lsi-Chr7:6285937 Lsi05g00415 Lsi-Chr5:5242144 5.63E-61 dispersed
Lsi01g00617 Lsi-Chr1:4940151 Lsi07g00592 Lsi-Chr7:6285937 1.03E-09 transposed
Lsi01g00888 Lsi-Chr1:7163430 Lsi07g00592 Lsi-Chr7:6285937 4.10E-26 transposed
Lsi01g00982 Lsi-Chr1:8084758 Lsi07g00592 Lsi-Chr7:6285937 4.34E-10 transposed
Lsi03g01014 Lsi-Chr3:19524894 Lsi07g00592 Lsi-Chr7:6285937 4.12E-26 transposed
Lsi05g00425 Lsi-Chr5:5422151 Lsi07g00592 Lsi-Chr7:6285937 2.16E-53 transposed
Lsi05g00977 Lsi-Chr5:17047906 Lsi07g00592 Lsi-Chr7:6285937 1.84E-08 transposed
Lsi05g01443 Lsi-Chr5:22324706 Lsi07g00592 Lsi-Chr7:6285937 3.37E-26 transposed
Lsi05g02028 Lsi-Chr5:27272239 Lsi07g00592 Lsi-Chr7:6285937 4.65E-88 transposed
Lsi08g01201 Lsi-Chr8:20561158 Lsi07g00592 Lsi-Chr7:6285937 3.40E-67 transposed
Lsi11g00431 Lsi-Chr11:4546763 Lsi07g00592 Lsi-Chr7:6285937 1.23E-09 transposed
Lsi11g01004 Lsi-Chr11:16958947 Lsi07g00592 Lsi-Chr7:6285937 4.44E-06 transposed
Lsi02g02921 Lsi-Chr2:35428963 Lsi07g00592 Lsi-Chr7:6285937 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25628 PF00270 DEAD 1.10E-39 CL0023 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00592 K03257 - csv:101223055 817.379