Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00615 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCAGGATACAGCCGCCGATGAACAGCCCAACCACGCCTCCTTCCCCCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCTGCCACCCACGATTGGAGATCTTATGAGAATGAAATGGGTGGAACGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAAACTCACCGCCGAACGCGCATAGTAACAACGCCGCCGCTGCCGCCGCCACTTTTATTCAGCCGAATAGTAGTAGTAATAATAATAATAATAGTAATAGTAGTAGTAATAATAATAATGATGATGATAATTACCATTACCAGGCGGATCATCAAACCCATCAATCTCTAATTCCTAACAATACTAATGCAATTTACAAATCCTGGTTGGGACCCACTTCGCAAAATGAGTGTGGGTTTCAATCTCTTTCTCTCGGCATCTGCCCCAACTCCCAAAACGACATCGCTTCATTGCCTTCACCGCCGCATATGGCTGCTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTCCCTAGAAAATCCATCGATACTTTTGGACAACGAACCTCCCAATATCGCGGTGTCACCAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGGTGGTTATGATAAGGAAGAGAAAGCAGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACACATATTAATTTTCCACTAAGCACTTATGAAAATGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGTGGTATACAGGAAAAAATATTGAAACTCTTTGA 930 44.09 MSNWLGFSLTPHLRIQDTAADEQPNHASFPHLMPLRSDGSLCIAATHDWRSYENEMGGTNEEESPKLEDFLGNCYSNSPPNAHSNNAAAAAATFIQPNSSSNNNNNSNSSSNNNNDDDNYHYQADHQTHQSLIPNNTNAIYKSWLGPTSQNECGFQSLSLGICPNSQNDIASLPSPPHMAADSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRWYTGKNIETL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6626254 6629591 + Lsi07G006150.1 Lsi07g00615 667037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00615 309 SMART rav1_2 213 280 IPR001471 GO:0003700|GO:0006355
Lsi07g00615 309 MobiDBLite consensus disorder prediction 96 118 - -
Lsi07g00615 309 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 301 - -
Lsi07g00615 309 SUPERFAMILY DNA-binding domain 212 276 IPR016177 GO:0003677
Lsi07g00615 309 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 4 301 - -
Lsi07g00615 309 MobiDBLite consensus disorder prediction 96 122 - -
Lsi07g00615 309 ProSiteProfiles AP2/ERF domain profile. 213 274 IPR001471 GO:0003700|GO:0006355
Lsi07g00615 309 Pfam AP2 domain 213 266 IPR001471 GO:0003700|GO:0006355
Lsi07g00615 309 Gene3D AP2/ERF domain 212 276 IPR036955 GO:0003700|GO:0006355
Lsi07g00615 309 MobiDBLite consensus disorder prediction 54 73 - -
Lsi07g00615 309 CDD AP2 212 276 IPR001471 GO:0003700|GO:0006355
Lsi07g00615 309 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00615 Lsi-Chr7:6626254 Lsi10g01048 Lsi-Chr10:14712752 9.02E-06 dispersed
Lsi07g00615 Lsi-Chr7:6626254 Lsi08g01547 Lsi-Chr8:23533820 4.17E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25631 PF00847 AP2 3.30E-06 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00615 K09285 - csv:101205762 427.943