Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00616 ATGCTGAAAAGCAGTGGATTTTCAAGAGGAGCCTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCTGGAAATAAAGACTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCGGCGGAGGCCTACGACATAGCGGCGATCAAGTTTAGGGGGACGAGTGCAGTGACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACACTGATTGCTAGTGACCTTGCGAAACGTTCACCGTTAAAGGACGGTACTCCCTCGACTACGGAAGACTATACCGCATGTGCTTCTCCATCATCGTCCTCGCAGCCTCTCTTGGCCATTACTGGCGATGCTGGTGCCGAGAGCCACCACGAATTGGTTGACATGGTTTGGTGTGACAATGCTGCTACAGACGATAGTAATCAACATCACGAGAATGCAGCAAAGATGGAGAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACTACGATGGATCCACCGTCAAAGTGCTCTCCGGTACAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGTCGGGGGTGGGGAGTATTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGGCAGCTGAATGTGACATTGGCTCATCATCATGTTCCAATGTTTGCTCTGTGGAACCAATGA 732 47.68 MLKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTTEDYTACASPSSSSQPLLAITGDAGAESHHELVDMVWCDNAATDDSNQHHENAAKMENDLSLMGSSNRTTMDPPSKCSPVQNNEEFGIGVGVGGGEYSQGYFSMQEEKYEDGNEEGDQNRQLNVTLAHHHVPMFALWNQ 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6629649 6631180 + Lsi07G006160.1 Lsi07g00616 667038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00616 243 SUPERFAMILY DNA-binding domain 12 73 IPR016177 GO:0003677
Lsi07g00616 243 MobiDBLite consensus disorder prediction 98 115 - -
Lsi07g00616 243 CDD AP2 12 73 IPR001471 GO:0003700|GO:0006355
Lsi07g00616 243 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Lsi07g00616 243 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Lsi07g00616 243 MobiDBLite consensus disorder prediction 94 115 - -
Lsi07g00616 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 174 - -
Lsi07g00616 243 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Lsi07g00616 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 174 - -
Lsi07g00616 243 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Lsi07g00616 243 PRINTS Ethylene responsive element binding protein signature 53 73 IPR001471 GO:0003700|GO:0006355
Lsi07g00616 243 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00616 Lsi-Chr7:6629649 Lsi11g00935 Lsi-Chr11:13539557 1.76E-47 dispersed
Lsi07g00616 Lsi-Chr7:6629649 Lsi01g00869 Lsi-Chr1:7000981 3.06E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25632 PF00847 AP2 1.90E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00616 K09285 - csv:101205762 401.364