Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00631 ATGAGACCGCTTCAGCCGCCTCAGGGTGCGAATCCTCCCACCGATCGTACTCGTCGCCGTCCACAGCTAAATCTTCATCTTCCGCAGAGGGACAATACGTCTTTGGCCGTTCCTTTACCTTTGCCTCCCACCTCCTCAAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCTCATCCTCAATCTCAGCAGCGTCAGGCGTTTAGCCTTTCGGAGTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGTGGAGGAACCGTTTACAAAGTCGTTCACCGTCCCACCGGTCGTGTTTATGCTCTCAAGGTCATTTATGGCAACCATGAGGATGCGGTTAGGCTCCAGATGTGTCGCGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTACATGGATCGGGGGTCTTTGGAAGGAACGCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGCGGCCTCGCTTATCTCCATAGCCGTCGTATCGTTCATCGCGACATCAAACCCTCGAATCTCCTTATCAATTCCCGAAGGCAGGTCAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGCAATTCCTCGGTTGGGACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTCGAGAGACCTGGGGATTGGGCGAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCGCCGCCCACTGCTTCACCGGAGTTTCGCCACTTTATTGCCTGTTGTTTGCAAAGAGAGGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCCTTCATAACCAGGAAAAATGGAGCAAGTCAGTACCAGAATCAGCAATCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCCCTTCATCCATCCAGCCTTTCCTGA 1113 51.93 MRPLQPPQGANPPTDRTRRRPQLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPHPQSQQRQAFSLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNQQSHHQNLRQLLPPPPLHPSSLS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6766995 6768107 + Lsi07G006310.1 Lsi07g00631 667053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00631 370 CDD PKc_MAPKK_plant_like 79 337 - -
Lsi07g00631 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 342 370 - -
Lsi07g00631 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 358 - -
Lsi07g00631 370 SMART serkin_6 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
Lsi07g00631 370 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Lsi07g00631 370 SUPERFAMILY Protein kinase-like (PK-like) 55 356 IPR011009 -
Lsi07g00631 370 ProSiteProfiles Protein kinase domain profile. 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 50 74 - -
Lsi07g00631 370 MobiDBLite consensus disorder prediction 342 356 - -
Lsi07g00631 370 Pfam Protein kinase domain 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 1 74 - -
Lsi07g00631 370 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 358 - -
Lsi07g00631 370 Gene3D Transferase(Phosphotransferase) domain 1 163 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00252 Lsi-Chr2:2139037 Lsi07g00631 Lsi-Chr7:6766995 2.84E-110 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi11g00218 Lsi-Chr11:2223292 2.17E-59 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi06g00302 Lsi-Chr6:3461235 2.23E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83776 PF00069 Pkinase 2.20E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00631 K13413 - csv:101219669 669.077