Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00631 ATGAGACCGCTTCAGCCGCCTCAGGGTGCGAATCCTCCCACCGATCGTACTCGTCGCCGTCCACAGCTAAATCTTCATCTTCCGCAGAGGGACAATACGTCTTTGGCCGTTCCTTTACCTTTGCCTCCCACCTCCTCAAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCTCATCCTCAATCTCAGCAGCGTCAGGCGTTTAGCCTTTCGGAGTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGTGGAGGAACCGTTTACAAAGTCGTTCACCGTCCCACCGGTCGTGTTTATGCTCTCAAGGTCATTTATGGCAACCATGAGGATGCGGTTAGGCTCCAGATGTGTCGCGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTACATGGATCGGGGGTCTTTGGAAGGAACGCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGCGGCCTCGCTTATCTCCATAGCCGTCGTATCGTTCATCGCGACATCAAACCCTCGAATCTCCTTATCAATTCCCGAAGGCAGGTCAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGCAATTCCTCGGTTGGGACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTCGAGAGACCTGGGGATTGGGCGAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCGCCGCCCACTGCTTCACCGGAGTTTCGCCACTTTATTGCCTGTTGTTTGCAAAGAGAGGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCCTTCATAACCAGGAAAAATGGAGCAAGTCAGTACCAGAATCAGCAATCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCCCTTCATCCATCCAGCCTTTCCTGA 1113 51.93 MRPLQPPQGANPPTDRTRRRPQLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPHPQSQQRQAFSLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNQQSHHQNLRQLLPPPPLHPSSLS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6766995 6768107 + Lsi07G006310.1 Lsi07g00631 667053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00631 370 CDD PKc_MAPKK_plant_like 79 337 - -
Lsi07g00631 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 342 370 - -
Lsi07g00631 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 358 - -
Lsi07g00631 370 SMART serkin_6 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
Lsi07g00631 370 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Lsi07g00631 370 SUPERFAMILY Protein kinase-like (PK-like) 55 356 IPR011009 -
Lsi07g00631 370 ProSiteProfiles Protein kinase domain profile. 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 50 74 - -
Lsi07g00631 370 MobiDBLite consensus disorder prediction 342 356 - -
Lsi07g00631 370 Pfam Protein kinase domain 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00631 370 MobiDBLite consensus disorder prediction 1 74 - -
Lsi07g00631 370 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 358 - -
Lsi07g00631 370 Gene3D Transferase(Phosphotransferase) domain 1 163 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00631 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00252 Lsi-Chr2:2139037 Lsi07g00631 Lsi-Chr7:6766995 2.84E-110 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi11g00218 Lsi-Chr11:2223292 2.17E-59 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi06g00302 Lsi-Chr6:3461235 2.23E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g955 . . . . . . Bma10g00703 . . . . . . Car14g01085 . . . . . . . . . . Cla07g01350 Cam07g1143 Cec07g1538 Cco07g1499 Clacu07g1422 Cmu07g1398 Cre07g1779 Cone20ag1378 . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01040 . . . . . . . . . . . . . . Lsi07g00631 Csa03g02812 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83776 PF00069 Pkinase 2.20E-60 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00631 Lsi_Chr07 FPKM 3.927007 4.795191 2.1869 2.055993 11.916295 10.768591 11.359858 0.0 0.0 0.0