Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00632 ATGGGATCAACAGAGGATAAAACAATTTACCTATCAGATGAAGAAGTTCCATTGAAGTCATCACCAGTTGCGAAGAACGTATTGCATAGCTTTGATTGTGAGACAGCTCCTGAGCGTTCTTCCCCAGATGATACGAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATGGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGATCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTGCTGGGGTCAATCTTATCAAATATGCTCCTTGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTATTCATGATAAGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCAGGATTATTGTTGATGGCTGTTATGGGAACAACCTTTCCGGCGGTGCTTCATTTCACCCACACGGAACTTCATTCCGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGCTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGCCAGCATAATCTCTATGGTCCTCTTGATGAGGAAGTTGAGGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTATTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCAGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAAACAGCAACTTTGTTTATCACTGTGCTAGTGGTGGCCTTTATGTTGCAGGTGCCTTATCTTCTATCCATCCTCCTGCAATTCAATAGCTTTTCTGTATAA 1182 40.61 MGSTEDKTIYLSDEEVPLKSSPVAKNVLHSFDCETAPERSSPDDTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGSTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIIHDKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVEDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQVPYLLSILLQFNSFSV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6769396 6775615 + Lsi07G006320.1 Lsi07g00632 667054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00632 393 Gene3D - 120 267 IPR044880 -
Lsi07g00632 393 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 377 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi07g00632 393 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016021|GO:0055085
Lsi07g00632 393 Pfam Sodium/calcium exchanger protein 277 337 IPR004837 GO:0016021|GO:0055085
Lsi07g00632 393 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 377 - -
Lsi07g00632 393 TIGRFAM cax: calcium/proton exchanger 73 338 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01544 Lsi-Chr1:13564225 Lsi07g00632 Lsi-Chr7:6769396 2.17E-53 dispersed
Lsi07g00632 Lsi-Chr7:6769396 Lsi10g00028 Lsi-Chr10:461280 4.95E-171 dispersed
Lsi07g00632 Lsi-Chr7:6769396 Lsi03g02209 Lsi-Chr3:33099706 1.24E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00632 K07300 - csv:101219432 694.501