Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00634 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCACTATCTGCATTTTGGGATGGATGGTCAGATTTATCAATGGAGCTACGGATCCAGGAGATGTCTCAGCTCTAAATGCCATGTATAGTAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATATGGAAAGGCATTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTGAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGTCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGAAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCGCCTGGGACACCTCCGTCCAACCAAAATTACAGATATCACAAGCCTGGGAGCAATTACAGCCCACTGAGTAGTAATGCTGCTGGTGGAGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTTGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTTATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCTTGATTCAAATGAAGTGCAAGATAAATTGGCAGAGATGAAGCTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTTCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGCACCTGTGGTGAAGAAGACCGATGTCACTGCTCTGATTAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACGGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGACGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGATGCCTTCCCTAGAGAATTTTTGGAAGATTTCACAGAGATCGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACTGAGCTAATGGGTTATTGCTCAGAGCATGGCCTGCATTTGCTACTATATGAGTTTCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCGCTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACGTTCAGTTTCTGGGAAGGCAATTGATGCTTTTTCAAATTTTAGTGCTATCATTACATTTCGACATGCTTACAACTCCCAAGATGCATATGTATACTTCTAAAAGTAAAACTGGAAGCTTTAAAATGCAAAGCTTTAAGGTCGCCTTACCATACAATTTGAGGTACCTACATGAAGGTTGTGCACCGTCAGTTGTTCACAGAAATATTAAGTCAGCCAATATCTTACTAGATGCTGAAATCAATCCTCATCTCTCCGATTGTGGCCTGGCTAGCTTCATAACCAATCTAGATCAGGTATTAGATCAGCAAGCAGGATCTGGGTACAGTGCTCCTGAGGTTACCATGTCTGGTCAATATACGTTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGCGGGCGTAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGGCTTTACCCAGTCAAGTCTCTCTCGAGATTTGCAGACGTTGTAGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCATTAGTTCGGCTTGTGCAGAGATCCAATATGAGCAGAAGAACATTCGGAAGTGATCATGGATCATCTTTTAGAAATGATGATCTTGATGCACTGGTTGTGTCATGTCATGTAAAGTTCAGTGTTTTCAGGTACAGTACAAGGATGGCTGATTCAGATCTTATTGGCCAATGGCCATCTCCTTCGTATGCAGCATAA 2436 42.65 MVKKWSWGEPLLLVTICILGWMVRFINGATDPGDVSALNAMYSSLNSPPILTQWSSSGGDPCGQIWKGITCLSSRVTEISLSGLGLSGSLGYQLSSLTSLSNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGVLPQSFSNLTSLNTMFLQNNQFSGTIDVLENLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPSNQNYRYHKPGSNYSPLSSNAAGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRLSTDIEKQKHGNLPSVSLDSNEVQDKLAEMKLVHTSSSFDAKELDSSASINLKPPPIDRHKSFDDNDTSKAPVVKKTDVTALISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSDAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYVQFLGRQLMLFQILVLSLHFDMLTTPKMHMYTSKSKTGSFKMQSFKVALPYNLRYLHEGCAPSVVHRNIKSANILLDAEINPHLSDCGLASFITNLDQVLDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRNDDLDALVVSCHVKFSVFRYSTRMADSDLIGQWPSPSYAA 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6790676 6798927 + Lsi07G006340.1 Lsi07g00634 667056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00634 811 Pfam Protein tyrosine and serine/threonine kinase 423 748 IPR001245 GO:0004672|GO:0006468
Lsi07g00634 811 Gene3D Ribonuclease Inhibitor 31 273 IPR032675 -
Lsi07g00634 811 SUPERFAMILY L domain-like 30 236 - -
Lsi07g00634 811 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 20 537 - -
Lsi07g00634 811 PANTHER OS01G0253100 PROTEIN 20 537 IPR045271 GO:0004714|GO:0006468
Lsi07g00634 811 SMART LRR_typ_2 167 190 IPR003591 -
Lsi07g00634 811 SMART LRR_typ_2 97 121 IPR003591 -
Lsi07g00634 811 SMART LRR_typ_2 143 166 IPR003591 -
Lsi07g00634 811 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 588 775 - -
Lsi07g00634 811 Gene3D Transferase(Phosphotransferase) domain 1 405 543 - -
Lsi07g00634 811 ProSiteProfiles Protein kinase domain profile. 421 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00634 811 MobiDBLite consensus disorder prediction 245 286 - -
Lsi07g00634 811 SUPERFAMILY Protein kinase-like (PK-like) 589 748 IPR011009 -
Lsi07g00634 811 SUPERFAMILY Protein kinase-like (PK-like) 403 538 IPR011009 -
Lsi07g00634 811 Gene3D Transferase(Phosphotransferase) domain 1 584 772 - -
Lsi07g00634 811 MobiDBLite consensus disorder prediction 262 286 - -
Lsi07g00634 811 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lsi07g00634 811 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Lsi07g00634 811 PANTHER OS01G0253100 PROTEIN 588 775 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01068 Lsi-Chr2:11694089 Lsi07g00634 Lsi-Chr7:6790676 0 dispersed
Lsi07g00634 Lsi-Chr7:6790676 Lsi11g01525 Lsi-Chr11:23648953 3.02E-48 dispersed
Lsi02g02850 Lsi-Chr2:34678825 Lsi07g00634 Lsi-Chr7:6790676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83777 PF07714 PK_Tyr_Ser-Thr 5.60E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00634 - - csv:101208239 927.161