Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00634 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCACTATCTGCATTTTGGGATGGATGGTCAGATTTATCAATGGAGCTACGGATCCAGGAGATGTCTCAGCTCTAAATGCCATGTATAGTAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATATGGAAAGGCATTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTGAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGTCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGAAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCGCCTGGGACACCTCCGTCCAACCAAAATTACAGATATCACAAGCCTGGGAGCAATTACAGCCCACTGAGTAGTAATGCTGCTGGTGGAGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTTGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTTATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCTTGATTCAAATGAAGTGCAAGATAAATTGGCAGAGATGAAGCTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTTCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGCACCTGTGGTGAAGAAGACCGATGTCACTGCTCTGATTAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACGGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGACGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGATGCCTTCCCTAGAGAATTTTTGGAAGATTTCACAGAGATCGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACTGAGCTAATGGGTTATTGCTCAGAGCATGGCCTGCATTTGCTACTATATGAGTTTCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCGCTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACGTTCAGTTTCTGGGAAGGCAATTGATGCTTTTTCAAATTTTAGTGCTATCATTACATTTCGACATGCTTACAACTCCCAAGATGCATATGTATACTTCTAAAAGTAAAACTGGAAGCTTTAAAATGCAAAGCTTTAAGGTCGCCTTACCATACAATTTGAGGTACCTACATGAAGGTTGTGCACCGTCAGTTGTTCACAGAAATATTAAGTCAGCCAATATCTTACTAGATGCTGAAATCAATCCTCATCTCTCCGATTGTGGCCTGGCTAGCTTCATAACCAATCTAGATCAGGTATTAGATCAGCAAGCAGGATCTGGGTACAGTGCTCCTGAGGTTACCATGTCTGGTCAATATACGTTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGCGGGCGTAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGGCTTTACCCAGTCAAGTCTCTCTCGAGATTTGCAGACGTTGTAGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCATTAGTTCGGCTTGTGCAGAGATCCAATATGAGCAGAAGAACATTCGGAAGTGATCATGGATCATCTTTTAGAAATGATGATCTTGATGCACTGGTTGTGTCATGTCATGTAAAGTTCAGTGTTTTCAGGTACAGTACAAGGATGGCTGATTCAGATCTTATTGGCCAATGGCCATCTCCTTCGTATGCAGCATAA 2436 42.65 MVKKWSWGEPLLLVTICILGWMVRFINGATDPGDVSALNAMYSSLNSPPILTQWSSSGGDPCGQIWKGITCLSSRVTEISLSGLGLSGSLGYQLSSLTSLSNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGVLPQSFSNLTSLNTMFLQNNQFSGTIDVLENLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPSNQNYRYHKPGSNYSPLSSNAAGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRLSTDIEKQKHGNLPSVSLDSNEVQDKLAEMKLVHTSSSFDAKELDSSASINLKPPPIDRHKSFDDNDTSKAPVVKKTDVTALISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSDAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYVQFLGRQLMLFQILVLSLHFDMLTTPKMHMYTSKSKTGSFKMQSFKVALPYNLRYLHEGCAPSVVHRNIKSANILLDAEINPHLSDCGLASFITNLDQVLDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRNDDLDALVVSCHVKFSVFRYSTRMADSDLIGQWPSPSYAA 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6790676 6798927 + Lsi07G006340.1 Lsi07g00634 667056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00634 811 Pfam Protein tyrosine and serine/threonine kinase 423 748 IPR001245 GO:0004672|GO:0006468
Lsi07g00634 811 Gene3D Ribonuclease Inhibitor 31 273 IPR032675 -
Lsi07g00634 811 SUPERFAMILY L domain-like 30 236 - -
Lsi07g00634 811 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 20 537 - -
Lsi07g00634 811 PANTHER OS01G0253100 PROTEIN 20 537 IPR045271 GO:0004714|GO:0006468
Lsi07g00634 811 SMART LRR_typ_2 167 190 IPR003591 -
Lsi07g00634 811 SMART LRR_typ_2 97 121 IPR003591 -
Lsi07g00634 811 SMART LRR_typ_2 143 166 IPR003591 -
Lsi07g00634 811 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 588 775 - -
Lsi07g00634 811 Gene3D Transferase(Phosphotransferase) domain 1 405 543 - -
Lsi07g00634 811 ProSiteProfiles Protein kinase domain profile. 421 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00634 811 MobiDBLite consensus disorder prediction 245 286 - -
Lsi07g00634 811 SUPERFAMILY Protein kinase-like (PK-like) 589 748 IPR011009 -
Lsi07g00634 811 SUPERFAMILY Protein kinase-like (PK-like) 403 538 IPR011009 -
Lsi07g00634 811 Gene3D Transferase(Phosphotransferase) domain 1 584 772 - -
Lsi07g00634 811 MobiDBLite consensus disorder prediction 262 286 - -
Lsi07g00634 811 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lsi07g00634 811 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Lsi07g00634 811 PANTHER OS01G0253100 PROTEIN 588 775 IPR045271 GO:0004714|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00634 - - - csv:101208239 927.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01068 Lsi-Chr2:11694089 Lsi07g00634 Lsi-Chr7:6790676 0 dispersed
Lsi07g00634 Lsi-Chr7:6790676 Lsi11g01525 Lsi-Chr11:23648953 3.02E-48 dispersed
Lsi02g02850 Lsi-Chr2:34678825 Lsi07g00634 Lsi-Chr7:6790676 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83777 PF07714 PK_Tyr_Ser-Thr 5.60E-36 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00634 Lsi_Chr07 FPKM 0.0 3.355258 0.0 0.0 5.425653 0.0 0.0 0.0 0.0 0.0