Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00641 ATGGCACAAACCGAGGACTCCACCGCCGCCGCCGCCGGTAGCCCCATTTCCATTTCCAACATAAAATTAGCGAAGCTCTTGATCTTAGCCATGTCGGCTGCACTTCTCCTGGCGGGCGTCTCTTCCGACGAGCACGTGAGAAGCACGTGCGCCGTGACGCTGTACCCCGAGCTTTGCGAGACGACGATATCCACCGCCGTGGCAAGTAGGAGTTCAAAAGAGGCAATCGAAGCATCGGTGAATATTACGATTGAAGCAGTGAAGGATAACTATAAAAGCATCAAGAAATTGGTTAAGACATTGAAGAATCTGACAAAGCGAGAGAAAATTGCTCTCAACGACTGTCTAGAAACTGGGGAGGAGACGCTGAGAGAGCTTTATGAGGTTGTTGAAGATCTCCATGAATACCCTAATAAGAAATCTCTCTCACAGTACGCCGATGACCTCAAAACCTTCCTTAGTTCCGCCATCACTAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGCTGATAAGAAGGTACGAGAGTCATTAGAAGCCGGCCTAATTCACGTCGAAAAGCTTTGTAGCATTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACAACCTCAATAGAAAGCAGTTGACGGAGATCAACAACGGTCGTAGTGACGACAATGGAATTAACTGGCCGAATTGGATGTCGCATGGTGACCGAAGGCTTTTGCAAGCGTCGTCCGCAGCCACTCCCAACGCGGTAGTTGCAGCCGACGGGAGTGGTGATTTCCGGACGGTGTTGGAGGCAGTTGTTGCCGCACCTAATAGAAGTAGCCAGAGGTATATAATAAGAATAAAGGCAGGAGTTTATAGAGAGAATGTGAATGTGCCGAGTAGTAAGAGGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACTGGGAACAGAAATGTCGTCGACGGCAGCACCACCTTCAACTCTGCCACCGTTGCGGCGGTTGGAGAAAGGTTCTTGGCGAGAGACCTTACGTTTCAAAACACCGCCGGTCCATCGAAGCACCAAGCGGTAGCTCTCCGTGTCGGCTCTGATCTCTCGGCTTTTTACCGCTGCGATATGCTCGCCTATCAAGACACACTCTATGTCCACTCCAACCGCCAATTCTACGTCAAATGCATCATCATTGGCTCCGTCGACTTCATTTTCGGCAACGCTGCTGCTGTCATCCAAGATTGTGATATCCACGCCCGGCGCCCCAATCCTGGCCAGAGGAACATGGTCACTGCACAGGGAAGAACAGACCCAAATCAGAATACTGGGATTGTCATCCAGAAATGTCGAATCGGAACCACCTCCGATTTGCGACCGGTGATTAGTAATTTCCCCACGTTTCTAGGGCGGCCATGGCAGAGATACTCAAGGACAGTGGTTATGCATACGAGCATTAGCAATGTGATTGATCCAGCAGGGTGGCATGTTTGGGATGGAAATTTTGCGCTTGATACTTTATTTTACGCTGAGTATCAAAATAATGGGCCTGGTGCTGATACGTCTAGGAGAGTGACGTGGAAGGGGTATAAGGTTATTACCAATGCGGCGGAAGCTGAGGCCTTTACGGCTGGAAATTTCATCAGCGGCGGCACTTGGCTGAGCTCCACTGGATTCCCATTTTCACTTGGGCTATAA 1695 49.38 MAQTEDSTAAAAGSPISISNIKLAKLLILAMSAALLLAGVSSDEHVRSTCAVTLYPELCETTISTAVASRSSKEAIEASVNITIEAVKDNYKSIKKLVKTLKNLTKREKIALNDCLETGEETLRELYEVVEDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSIALALIKNLTDTDIANHNNLNRKQLTEINNGRSDDNGINWPNWMSHGDRRLLQASSAATPNAVVAADGSGDFRTVLEAVVAAPNRSSQRYIIRIKAGVYRENVNVPSSKRNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDLTFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIIGSVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLRPVISNFPTFLGRPWQRYSRTVVMHTSISNVIDPAGWHVWDGNFALDTLFYAEYQNNGPGADTSRRVTWKGYKVITNAAEAEAFTAGNFISGGTWLSSTGFPFSLGL 564
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 6839640 6844869 + Lsi07G006410.1 Lsi07g00641 667063
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00641 564 SUPERFAMILY Pectin lyase-like 247 563 IPR011050 -
Lsi07g00641 564 PANTHER PECTINESTERASE 42 563 - -
Lsi07g00641 564 Gene3D - 247 564 IPR012334 -
Lsi07g00641 564 Coils Coil 84 104 - -
Lsi07g00641 564 Pfam Plant invertase/pectin methylesterase inhibitor 46 197 IPR006501 GO:0004857
Lsi07g00641 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 202 IPR035513 -
Lsi07g00641 564 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Lsi07g00641 564 PANTHER PECTINESTERASE 42 563 - -
Lsi07g00641 564 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Lsi07g00641 564 SMART PMEI_2 41 197 IPR006501 GO:0004857
Lsi07g00641 564 CDD PMEI-like_3 48 202 - -
Lsi07g00641 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Lsi07g00641 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 203 IPR035513 -
Lsi07g00641 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 202 IPR006501 GO:0004857
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02434 Lsi-Chr2:30889968 Lsi07g00641 Lsi-Chr7:6839640 3.72E-172 dispersed
Lsi07g00641 Lsi-Chr7:6839640 Lsi09g00498 Lsi-Chr9:5184085 2.59E-144 dispersed
Lsi02g02108 Lsi-Chr2:27269539 Lsi07g00641 Lsi-Chr7:6839640 0 transposed
Lsi02g02855 Lsi-Chr2:34762746 Lsi07g00641 Lsi-Chr7:6839640 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00641 K01051 - csv:101207996 924.08