Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00642 ATGGATACCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGGCAAAAGACTCGCCGTCGGCTAATTATACTCCTTCTTTCCATTGTTCTTCTAATTGCTCTCATCATCGGCGCCGTCGTCGGAATCGTCATTCATAAACGAAACTCTTCTTCTTCATCGCCGACGAGCTCAGCTCCTCCCACCGAGATCACTCCTGCTGCCTCACTCAAAACTCTCTGTAGTGTCACTCAGTATCCAAGTTCGTGTCAGTCCTCTCTCCAAAACTCCAACACCACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACTGATTCGTTCTCGAAACTCTCCGATTATACCTCTAATCTCCATTCCAATACTGGAGATCCGAAGGTTAAAGCCGCAATTGAAATCTGCCGCAGTGTTTTTGAAGATGCCATTGACACGCTAAACGACACCGTTTCATCCATGGAAGTAGATCACCATAGTGAGAAGTTCTTGTCGCCGTCTAGGATTGAAGATCTTAAAACCTGGCTGAGCACTGCAATAACAGATCAAGAAACCTGCCTCGACGCCGTTCGAGATCTAAACCAGACGACGGTTCTCCAAAACTTGCAAACGGCAATGGCGAACTCTACCGAGTTTACTAGCAATAGTTTAGCGATTGTAACGAAAATTCTTGGATTGTTGGCGGATTTCAACATCCCTATCCACCGGAAACTGATGGGACTCCCGGAGTGGGTAAGCTCCGGCGACCGAAGGCTTTTGCAGGAGAACAATGTGACGGCGCATGTGACGGTGTCGAAGGATGGGAAAGGGGACTACACAACGATCAAAGATGCCGTAGCAGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATATACGTAAAAGAAGGAATATACGAAGAGAATGTGATTTTAGACAAGAACAAGTGGAATGTTATGATGTATGGAGATGGTAGAACCAAAACCATTGTTTCCGGCCGCCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGGAAAGGGTTCATTGGAAAGGACATGGGGTTCATCAACACGGCCGGTCCAGCCAAGCACCAGGCTGTTGCCTTCCGGTCAGGCTCTGACCTTTCTGTGATGTCCGGATGTTCATTTGATGGCTATCAAGACACTCTCTACGCCCATTCAAACCGTCAATTCTATCGAGACTGCGACATCACTGGCACCATCGACTTCATCTTCGGCAACGCCGCTGTGGTGTTCCAGAATTGCAAAATCCGGCCAAGGCAGCCACTTCTCAACCAATTCAACACCATCACAGCTCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGAAAGTCTCACCGCCCCCACTTACTTGGGGCGGCCATGGAAGGAGTTTTCCACCACGGTGATTATGCAGTCGGAGATCGGAGCATTCCTGCAGCCCGTCGGGTGGAAGGAATGGGTCAGCGGGCAAGACCCACCCAACACCATATTTTATGGGGAGTATCAGAATACAGGGCCTGGATCCAGCGTGGACAAGAGGGTTAAATGGGTCGGTTACAGGTCCAGTCTTACAGACGCCGAGGCCGGAAAGTTCACTGTCAGGACCTTTCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAGTTTGATACATCCTTGTGA 1731 49.68 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIILLLSIVLLIALIIGAVVGIVIHKRNSSSSSPTSSAPPTEITPAASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSFSKLSDYTSNLHSNTGDPKVKAAIEICRSVFEDAIDTLNDTVSSMEVDHHSEKFLSPSRIEDLKTWLSTAITDQETCLDAVRDLNQTTVLQNLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWVSSGDRRLLQENNVTAHVTVSKDGKGDYTTIKDAVAAVPKKSKERFIIYVKEGIYEENVILDKNKWNVMMYGDGRTKTIVSGRLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIRPRQPLLNQFNTITAQGKKDINQNSGISIQKCTFSAYNESLTAPTYLGRPWKEFSTTVIMQSEIGAFLQPVGWKEWVSGQDPPNTIFYGEYQNTGPGSSVDKRVKWVGYRSSLTDAEAGKFTVRTFLNGEDWLPATSVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6857228 6859820 + Lsi07G006420.1 Lsi07g00642 667064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00642 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lsi07g00642 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Lsi07g00642 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599|GO:0042545
Lsi07g00642 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Lsi07g00642 576 CDD PMEI-like_3 79 230 - -
Lsi07g00642 576 Gene3D - 262 576 IPR012334 -
Lsi07g00642 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Lsi07g00642 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
Lsi07g00642 576 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
Lsi07g00642 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857
Lsi07g00642 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 230 IPR035513 -
Lsi07g00642 576 PANTHER PECTINESTERASE 8 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00057 Lsi-Chr2:539539 Lsi07g00642 Lsi-Chr7:6857228 6.31E-34 dispersed
Lsi02g00946 Lsi-Chr2:9404319 Lsi07g00642 Lsi-Chr7:6857228 1.27E-145 dispersed
Lsi07g00642 Lsi-Chr7:6857228 Lsi11g00122 Lsi-Chr11:1390273 4.91E-140 dispersed
Lsi07g00642 Lsi-Chr7:6857228 Lsi09g01450 Lsi-Chr9:22477690 4.16E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00642 - - csv:101207508 1038.48