Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00647 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGTGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCGTTTCCAGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATCCCAAATGGAGGCAGAATGGCAGAGGCTCTTCATTCTAAGGTGACTTATATGAGATTCATCATTGTGCAGGGAATTCCTTATCTCATGTATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGCGCTGCTTTTAGGCTTTATTGTGTGAGGAGCAATTATGGTCTGCCCGGGATTGCTGATGACAGTATTATGAGTGATCTAGGGCCACAGCTTATTGGGGAACCCCTAAAGATTAACGTAGAACCTCCCGAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAATATTCATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTTAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGACCAGCTCTTGGAGAAACACATCAAACATGAGATTATTGAAAATAACCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATACGTCGTATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAGGGGATGATAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAATCAAGCCAAGGAAAAAGGAGCACTCTTTCACATGACAGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAACCTGCACCAATGAATGGGTTCAAGGCACCCTTACTCCCAGCGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTGTGAATAGGAATAAAATGACGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGTCTATCCAAGGCTATTTTATCCATTGTTACTCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACCGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAATCCATTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTAAAGGATGTCATGGAGTTTTTATTACTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGCATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGTAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATATCTTGA 2385 43.23 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRMAEALHSKVTYMRFIIVQGIPYLMYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCVRSNYGLPGIADDSIMSDLGPQLIGEPLKINVEPPEVDAGEGEDEDGSLETLPAINIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDTSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDDNDKHSEQLLVSVLPSWFKPPTPSRKRVESSQGKRSTLSHDSLAYANIPSIRRVGREEPAPMNGFKAPLLPARKRLKVASMRPVPRVNRNKMTPFSGLTEVDGNNGGLSKAILSIVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVVNGSPQGITNPRIS 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6887838 6895049 + Lsi07G006470.1 Lsi07g00647 667069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00647 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 777 IPR013083 -
Lsi07g00647 794 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 783 IPR042293 -
Lsi07g00647 794 SUPERFAMILY ARID-like 607 722 IPR036431 GO:0003677
Lsi07g00647 794 SMART ARID_2 604 707 - -
Lsi07g00647 794 CDD ARID 609 707 - -
Lsi07g00647 794 SUPERFAMILY FYVE/PHD zinc finger 703 771 IPR011011 -
Lsi07g00647 794 ProSiteProfiles ARID domain profile. 607 711 IPR001606 GO:0003677
Lsi07g00647 794 CDD PHD_ARID4_like 717 768 - -
Lsi07g00647 794 Gene3D - 604 707 IPR036431 GO:0003677
Lsi07g00647 794 Pfam ARID/BRIGHT DNA binding domain 610 707 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02861 Lsi-Chr2:34818953 Lsi07g00647 Lsi-Chr7:6887838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25634 PF01388 ARID 7.40E-14 CL0123 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00647 - - csv:101215769 1481.08