Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00647 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGTGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCGTTTCCAGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATCCCAAATGGAGGCAGAATGGCAGAGGCTCTTCATTCTAAGGTGACTTATATGAGATTCATCATTGTGCAGGGAATTCCTTATCTCATGTATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGCGCTGCTTTTAGGCTTTATTGTGTGAGGAGCAATTATGGTCTGCCCGGGATTGCTGATGACAGTATTATGAGTGATCTAGGGCCACAGCTTATTGGGGAACCCCTAAAGATTAACGTAGAACCTCCCGAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAATATTCATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTTAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGACCAGCTCTTGGAGAAACACATCAAACATGAGATTATTGAAAATAACCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATACGTCGTATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAGGGGATGATAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAATCAAGCCAAGGAAAAAGGAGCACTCTTTCACATGACAGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAACCTGCACCAATGAATGGGTTCAAGGCACCCTTACTCCCAGCGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTGTGAATAGGAATAAAATGACGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGTCTATCCAAGGCTATTTTATCCATTGTTACTCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACCGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAATCCATTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTAAAGGATGTCATGGAGTTTTTATTACTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGCATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGTAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATATCTTGA 2385 43.23 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRMAEALHSKVTYMRFIIVQGIPYLMYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCVRSNYGLPGIADDSIMSDLGPQLIGEPLKINVEPPEVDAGEGEDEDGSLETLPAINIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDTSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDDNDKHSEQLLVSVLPSWFKPPTPSRKRVESSQGKRSTLSHDSLAYANIPSIRRVGREEPAPMNGFKAPLLPARKRLKVASMRPVPRVNRNKMTPFSGLTEVDGNNGGLSKAILSIVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVVNGSPQGITNPRIS 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6887838 6895049 + Lsi07G006470.1 Lsi07g00647 667069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00647 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 777 IPR013083 -
Lsi07g00647 794 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 783 IPR042293 -
Lsi07g00647 794 SUPERFAMILY ARID-like 607 722 IPR036431 GO:0003677
Lsi07g00647 794 SMART ARID_2 604 707 - -
Lsi07g00647 794 CDD ARID 609 707 - -
Lsi07g00647 794 SUPERFAMILY FYVE/PHD zinc finger 703 771 IPR011011 -
Lsi07g00647 794 ProSiteProfiles ARID domain profile. 607 711 IPR001606 GO:0003677
Lsi07g00647 794 CDD PHD_ARID4_like 717 768 - -
Lsi07g00647 794 Gene3D - 604 707 IPR036431 GO:0003677
Lsi07g00647 794 Pfam ARID/BRIGHT DNA binding domain 610 707 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00647 - - - csv:101215769 1481.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02861 Lsi-Chr2:34818953 Lsi07g00647 Lsi-Chr7:6887838 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01784 . 16 301 ARID Transcription Factor Family AT1G76110 63.8 4.0e-103 371.7
Lsi07g00647 . 1 783 ARID Transcription Factor Family AT3G43240 58.4 8.4e-263 903.3
Lsi02g02861 . 2 775 ARID Transcription Factor Family AT3G43240 57.1 8.2e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25634 PF01388 ARID 7.40E-14 CL0123 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00647 Lsi_Chr07 FPKM 11.753318 12.899648 11.444524 12.686602 10.92831 13.933684 11.353353 16.53915 17.035536 15.959127