Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00675 ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCACTTCGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTACAGGGAGAGAGAGTTCTGTTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGTCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTACGTCCATAGATCTTGTCTAGATAATTGGAGATCCACAAAGGAGGGCTTTGCTTTCGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTTAAGTTTCAATTTCTTGTTGCCAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAGATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTTTTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAGCGCCATTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 789 42.08 MQLVPNHDENKDDILERAPILSHFDFLPQSVGSSSSAEIAEIIATGRESSVSDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 262
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7231389 7235268 - Lsi07G006750.1 Lsi07g00675 667097
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00675 262 SUPERFAMILY RING/U-box 70 126 - -
Lsi07g00675 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270
Lsi07g00675 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Lsi07g00675 262 SMART ringv_2 74 123 IPR011016 GO:0008270
Lsi07g00675 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Lsi07g00675 262 PANTHER OS02G0132300 PROTEIN 2 261 - -
Lsi07g00675 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270
Lsi07g00675 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 261 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00932 Lsi-Chr6:19176905 Lsi07g00675 Lsi-Chr7:7231389 3.10E-30 dispersed
Lsi07g00675 Lsi-Chr7:7231389 Lsi09g00118 Lsi-Chr9:1138493 5.84E-06 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00675 - - bhj:120075028 527.324