Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00675 | ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCACTTCGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTACAGGGAGAGAGAGTTCTGTTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGTCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTACGTCCATAGATCTTGTCTAGATAATTGGAGATCCACAAAGGAGGGCTTTGCTTTCGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTTAAGTTTCAATTTCTTGTTGCCAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAGATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTTTTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAGCGCCATTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA | 789 | 42.08 | MQLVPNHDENKDDILERAPILSHFDFLPQSVGSSSSAEIAEIIATGRESSVSDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY | 262 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7231389 | 7235268 | - | Lsi07G006750.1 | Lsi07g00675 | 667097 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00675 | 262 | SUPERFAMILY | RING/U-box | 70 | 126 | - | - | |
| Lsi07g00675 | 262 | Pfam | RING-variant domain | 75 | 122 | IPR011016 | GO:0008270 | |
| Lsi07g00675 | 262 | CDD | RING_CH-C4HC3_MARCH | 75 | 123 | - | - | |
| Lsi07g00675 | 262 | SMART | ringv_2 | 74 | 123 | IPR011016 | GO:0008270 | |
| Lsi07g00675 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 127 | IPR013083 | - | |
| Lsi07g00675 | 262 | PANTHER | OS02G0132300 PROTEIN | 2 | 261 | - | - | |
| Lsi07g00675 | 262 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 129 | IPR011016 | GO:0008270 | |
| Lsi07g00675 | 262 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 261 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g00932 | Lsi-Chr6:19176905 | Lsi07g00675 | Lsi-Chr7:7231389 | 3.10E-30 | dispersed | |
| Lsi07g00675 | Lsi-Chr7:7231389 | Lsi09g00118 | Lsi-Chr9:1138493 | 5.84E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00675 | - | - | bhj:120075028 | 527.324 |