Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00689 ATGGTATTTTTTAAATTGGATGCAATACCAAGTCAACTTTCAGAGAGTCATACGAATACCTCTTCTTCTCTTCTCCAATGGAACAACGACCCATCTGATCAAAATTCCTTCTTCTCTCTTCTTCAATGGATTCCCCAATTTCCTCATTCCTTCTGTTCTTTTCCTTTTCCCTTCTATTCGTTTTTGGGAATCCCTTCGATTTCTACAGCTCCTGTAGCAATCGCTTCAACTGCGGCGACATCACCAACGTCGGCTACCCATTCTGGGGTGACGGAAGGTCTGCCGGCTGCGGCAATCCGGCGCTACAATTGGCCTGCGAAGGAAATAAGACAACGATCCGTCGAAAATAATTCTCAAACGCTCACCATCGCCAGAGTCGATTATATGGATACTCTCTGCCCTAAGAAATTCATCAATACCACAATCGATTACAATCTCTTCGATTTAGTTCCTACTTATCGCAATATCACCTTGCTCTATTGCTCCTCTTCCCCCCTCGCCGGGCAATTTAGCTGTCCTGGATATGAGTTCGGCTTCATTCAAGGGAGCCCCATCGGTACCAGTTTCTGCAATGTGAGCGTCATCGTACCGGTTTCTTTGAATTTCTTCCCGCCGGTGAGCGATGTTGTGAACTCTACTGAGATGTTGAAGGCCATTGACGAGGGATTTGAGGTGAGATCGAAGGAGGATGGCGGTGGATGTCGAATTTGTGAGCAGTCGGAAGGAGTTTGCGGTTACGATTTGAGTTCGAATCGGACGACTTGCTATTGTCGCGCCGGCGATTCTAATGATAACGGAGCTTGTAGTAATCTTTCGGCCGGTGGAGGTCCGGCATCTTCTCCGGGCCTTTCTATTGGAGGGGCAACTGTATTAGGCCTATGCTTAGGATGCTTTGTCTTCTATATTACAAAACGCAATAAAAAACATGTTCTGAAGTTGAAAAGCAAAGATCTTTCTTCACCTCCTTCAAGTGGAGGCATTCCGACTCCCTCAACGTTTCGCTCTAATAGTATTCCTTCCTATCCTTATTCGAGATCTAATCTCGAGAACGGGAGCTCGTACTTTGGAGCTCAAGTCTTTACCTATGCTGAACTTGAGGAAGCAACTCATAATTTTGATCGTTCAAGGGAGCTTGGAGATGGAGTAAAGCGACTATACGAGAACAATTATAAGCGCGTCGAGCAGTTCACAAATGAAGTTGAGATTCTCTCAAGATTGCAACATCCGAACCTCGTGAAGCTTTACGGATGCACATCGAGACATAGCCGAGAACTCCTCCTTGTATATGAGTACATTTCTAATGGAACAGTGGCTGACCATCTTCATGGAAAACGAGCAAATTCAGGTCTCCTCAGTTGGTCTATTAGACTCAAGATTGCTATAGAGACAGCTAATGCACTGGCTTACCTCCATCGCAATGATATCATTCATCGTGATGTCAAAACCAATAACATTCTTCTTGACAACAACTTCAAAGTAAAAGTGGCCGATTTCGGCCTGTCGCGGTTATTTCCCCTCGACGTTACTCATGTTTCAACCGCTCCACAAGGGACACCAGGCTATGTTGATCCCGAGTATTATCAATGCTACCAACTTACCGACAAGAGCGACGTATATAGCTTTGGAGTTGTTTTGGTCGAGCTTATATCGTCGCTACAGGCAGTTGACATCGACAGGAACAGAAATGATATCAATTTGTCAAATATGGCTATTGATAGAATTCAAAATCATGCATTGGCTGATTTAATTGATCCAAATCTTGGGTTTGAGAGGGATTATGCAGTAAGGTGTATGATAAAGTCAGTGGCAGAGTTGGCTTATCGATGTCTTCAACAGACAAGGGATGTGCGACCTTCTATGGATGATGTGCTGAAAATTCTAAAAGAAGTAGAGAATGAAGAACTGGCTGCTCGTAAAGCAGAAGTGCTAGATATAGGGTCTGATAATGTGAGACTTTTAAGGAATACATCATCTCTGCTTTCACCAGATGCTGGACCAGTGACGGATAAATGG 2013 44.26 MVFFKLDAIPSQLSESHTNTSSSLLQWNNDPSDQNSFFSLLQWIPQFPHSFCSFPFPFYSFLGIPSISTAPVAIASTAATSPTSATHSGVTEGLPAAAIRRYNWPAKEIRQRSVENNSQTLTIARVDYMDTLCPKKFINTTIDYNLFDLVPTYRNITLLYCSSSPLAGQFSCPGYEFGFIQGSPIGTSFCNVSVIVPVSLNFFPPVSDVVNSTEMLKAIDEGFEVRSKEDGGGCRICEQSEGVCGYDLSSNRTTCYCRAGDSNDNGACSNLSAGGGPASSPGLSIGGATVLGLCLGCFVFYITKRNKKHVLKLKSKDLSSPPSSGGIPTPSTFRSNSIPSYPYSRSNLENGSSYFGAQVFTYAELEEATHNFDRSRELGDGVKRLYENNYKRVEQFTNEVEILSRLQHPNLVKLYGCTSRHSRELLLVYEYISNGTVADHLHGKRANSGLLSWSIRLKIAIETANALAYLHRNDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDIDRNRNDINLSNMAIDRIQNHALADLIDPNLGFERDYAVRCMIKSVAELAYRCLQQTRDVRPSMDDVLKILKEVENEELAARKAEVLDIGSDNVRLLRNTSSLLSPDAGPVTDKW 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7422634 7427338 - Lsi07G006890.1 Lsi07g00689 667111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00689 671 SMART serkin_6 372 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00689 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Lsi07g00689 671 Pfam Wall-associated receptor kinase C-terminal 188 259 IPR032872 -
Lsi07g00689 671 ProSiteProfiles Protein kinase domain profile. 344 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00689 671 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 110 663 IPR044652 -
Lsi07g00689 671 SUPERFAMILY Protein kinase-like (PK-like) 350 627 IPR011009 -
Lsi07g00689 671 PANTHER - 110 663 - -
Lsi07g00689 671 Gene3D Transferase(Phosphotransferase) domain 1 433 644 - -
Lsi07g00689 671 Gene3D Phosphorylase Kinase; domain 1 375 432 - -
Lsi07g00689 671 Pfam Protein tyrosine and serine/threonine kinase 380 626 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00430 Lsi-Chr3:4888300 Lsi07g00689 Lsi-Chr7:7422634 2.29E-168 dispersed
Lsi04g00234 Lsi-Chr4:2377209 Lsi07g00689 Lsi-Chr7:7422634 1.52E-139 dispersed
Lsi06g01317 Lsi-Chr6:23754335 Lsi07g00689 Lsi-Chr7:7422634 8.64E-153 dispersed
Lsi07g00689 Lsi-Chr7:7422634 Lsi07g00925 Lsi-Chr7:11018421 9.87E-128 dispersed
Lsi07g00689 Lsi-Chr7:7422634 Lsi07g00690 Lsi-Chr7:7431613 8.21E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83779 PF07714 PK_Tyr_Ser-Thr 1.50E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00689 - - mcha:111016973 860.522