Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00734 ATGGGAGATGAACTTTACACTGAGCTATGGAAGGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTCTATTTTCCTCAAGGTCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTGTTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGATTCAGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACAAGTCTTGATCCTTCACCCCCTGAGTGTAGAAAACCAAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGCGGGTTCTCCGTGCTTCGGAAACATGCCACCGAATGCCTGCCTCCATTGGTAATTCTGCTTTACCAAGTTATCTTTTGCTCTTCTCTCGATATGACCCAGCAGACCCCAACTCAGGAACTTGTAGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCATATATTTAGGGGTGAGCCTCCTCCCTGTTACTCTGATTACAATCACATGTTTATGAACAGTCAACCACGAAGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCATTTGTGTTCTTGAGGTATCTTGATTTTCCTTCTGTGGATGTTATACTTCTTATGTTAACTCCTTCTGAAATTGTTTCATTTAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGACAACAGAGCAGCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCACGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATGGAAGCAATGAACAATAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTCGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGACAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCACACTCTATTTCCGTAAAGACTAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACCCTACGACATCCAGGATCAACTCAATCACATGATGATCGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCACTACAAGCAAACGGATGTTAGCAGCAATGGAAATTCTGTATCGAGGAATCCGATGGAAGGCTCTTGGTTAACTTCTCTGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGATGACCGCAAAAGCAGTTCTGTTTGGTCAACGGTCTTTCCGGGAGTGCTGGCAGCACACTCAACATGTCCAACTCCACGCTCATTAAATCCGAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATTGAGCTCATAAATCATTCTAAGAGCCCAGCTCCTCCTGAAAGGTCGACTGATCAACCAATTAACACACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATTCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTTGGACGTGCGGTGGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTGGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGACGAAGGAGATACGATGCTCATGGGCGATTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCAGGTAGCAAACTTGCAATGTCTACAATCGAATGTGACGGGATAGTAATAACCTCGGAGTCTGCCGACAGCTGA 2193 45.14 MGDELYTELWKVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLVILLYQVIFCSSLDMTQQTPTQELVAKDLHGYEWRFKHIFRGEPPPCYSDYNHMFMNSQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRYLDFPSVDVILLMLTPSEIVSFRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYMEAMNNKFLVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSEWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISVKTKRPRPPLEILDSDNSTVTTLRHPGSTQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRNPMEGSWLTSLNGSVSQHRLQDLTDDRKSSSVWSTVFPGVLAAHSTCPTPRSLNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPAPPERSTDQPINTPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGIVITSESADS 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7957652 7961281 + Lsi07G007340.1 Lsi07g00734 667156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00734 730 Pfam B3 DNA binding domain 110 226 IPR003340 GO:0003677
Lsi07g00734 730 Gene3D - 614 706 - -
Lsi07g00734 730 MobiDBLite consensus disorder prediction 607 623 - -
Lsi07g00734 730 SUPERFAMILY DNA-binding pseudobarrel domain 98 291 IPR015300 -
Lsi07g00734 730 ProSiteProfiles PB1 domain profile. 619 700 IPR000270 GO:0005515
Lsi07g00734 730 Gene3D - 323 394 - -
Lsi07g00734 730 Pfam Auxin response factor 288 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi07g00734 730 ProSiteProfiles B3 DNA-binding domain profile. 162 245 IPR003340 GO:0003677
Lsi07g00734 730 SUPERFAMILY CAD & PB1 domains 613 695 - -
Lsi07g00734 730 PANTHER AUXIN RESPONSE FACTOR 9 2 227 - -
Lsi07g00734 730 MobiDBLite consensus disorder prediction 398 417 - -
Lsi07g00734 730 MobiDBLite consensus disorder prediction 563 588 - -
Lsi07g00734 730 SMART B3_2 110 245 IPR003340 GO:0003677
Lsi07g00734 730 Pfam AUX/IAA family 608 655 IPR033389 -
Lsi07g00734 730 Pfam AUX/IAA family 666 702 IPR033389 -
Lsi07g00734 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 246 717 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi07g00734 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 227 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi07g00734 730 MobiDBLite consensus disorder prediction 517 541 - -
Lsi07g00734 730 PANTHER AUXIN RESPONSE FACTOR 9 246 717 - -
Lsi07g00734 730 CDD B3_DNA 108 262 IPR003340 GO:0003677
Lsi07g00734 730 MobiDBLite consensus disorder prediction 558 623 - -
Lsi07g00734 730 Gene3D - 107 263 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02036 Lsi-Chr2:26424205 Lsi07g00734 Lsi-Chr7:7957652 7.47E-29 dispersed
Lsi07g00734 Lsi-Chr7:7957652 Lsi09g00162 Lsi-Chr9:1700937 0 dispersed
Lsi07g00734 Lsi-Chr7:7957652 Lsi02g00922 Lsi-Chr2:8889744 7.59E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25642 PF02362 B3 1.10E-13 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00734 K14486 - csv:101213942 1209.51