Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00734 | ATGGGAGATGAACTTTACACTGAGCTATGGAAGGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTCTATTTTCCTCAAGGTCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTGTTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGATTCAGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACAAGTCTTGATCCTTCACCCCCTGAGTGTAGAAAACCAAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGCGGGTTCTCCGTGCTTCGGAAACATGCCACCGAATGCCTGCCTCCATTGGTAATTCTGCTTTACCAAGTTATCTTTTGCTCTTCTCTCGATATGACCCAGCAGACCCCAACTCAGGAACTTGTAGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCATATATTTAGGGGTGAGCCTCCTCCCTGTTACTCTGATTACAATCACATGTTTATGAACAGTCAACCACGAAGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCATTTGTGTTCTTGAGGTATCTTGATTTTCCTTCTGTGGATGTTATACTTCTTATGTTAACTCCTTCTGAAATTGTTTCATTTAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGACAACAGAGCAGCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCACGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATGGAAGCAATGAACAATAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTCGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGACAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCACACTCTATTTCCGTAAAGACTAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACCCTACGACATCCAGGATCAACTCAATCACATGATGATCGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCACTACAAGCAAACGGATGTTAGCAGCAATGGAAATTCTGTATCGAGGAATCCGATGGAAGGCTCTTGGTTAACTTCTCTGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGATGACCGCAAAAGCAGTTCTGTTTGGTCAACGGTCTTTCCGGGAGTGCTGGCAGCACACTCAACATGTCCAACTCCACGCTCATTAAATCCGAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATTGAGCTCATAAATCATTCTAAGAGCCCAGCTCCTCCTGAAAGGTCGACTGATCAACCAATTAACACACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATTCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTTGGACGTGCGGTGGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTGGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGACGAAGGAGATACGATGCTCATGGGCGATTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCAGGTAGCAAACTTGCAATGTCTACAATCGAATGTGACGGGATAGTAATAACCTCGGAGTCTGCCGACAGCTGA | 2193 | 45.14 | MGDELYTELWKVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLVILLYQVIFCSSLDMTQQTPTQELVAKDLHGYEWRFKHIFRGEPPPCYSDYNHMFMNSQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRYLDFPSVDVILLMLTPSEIVSFRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYMEAMNNKFLVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSEWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISVKTKRPRPPLEILDSDNSTVTTLRHPGSTQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRNPMEGSWLTSLNGSVSQHRLQDLTDDRKSSSVWSTVFPGVLAAHSTCPTPRSLNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPAPPERSTDQPINTPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGIVITSESADS | 730 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7957652 | 7961281 | + | Lsi07G007340.1 | Lsi07g00734 | 667156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00734 | 730 | Pfam | B3 DNA binding domain | 110 | 226 | IPR003340 | GO:0003677 | |
Lsi07g00734 | 730 | Gene3D | - | 614 | 706 | - | - | |
Lsi07g00734 | 730 | MobiDBLite | consensus disorder prediction | 607 | 623 | - | - | |
Lsi07g00734 | 730 | SUPERFAMILY | DNA-binding pseudobarrel domain | 98 | 291 | IPR015300 | - | |
Lsi07g00734 | 730 | ProSiteProfiles | PB1 domain profile. | 619 | 700 | IPR000270 | GO:0005515 | |
Lsi07g00734 | 730 | Gene3D | - | 323 | 394 | - | - | |
Lsi07g00734 | 730 | Pfam | Auxin response factor | 288 | 366 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi07g00734 | 730 | ProSiteProfiles | B3 DNA-binding domain profile. | 162 | 245 | IPR003340 | GO:0003677 | |
Lsi07g00734 | 730 | SUPERFAMILY | CAD & PB1 domains | 613 | 695 | - | - | |
Lsi07g00734 | 730 | PANTHER | AUXIN RESPONSE FACTOR 9 | 2 | 227 | - | - | |
Lsi07g00734 | 730 | MobiDBLite | consensus disorder prediction | 398 | 417 | - | - | |
Lsi07g00734 | 730 | MobiDBLite | consensus disorder prediction | 563 | 588 | - | - | |
Lsi07g00734 | 730 | SMART | B3_2 | 110 | 245 | IPR003340 | GO:0003677 | |
Lsi07g00734 | 730 | Pfam | AUX/IAA family | 608 | 655 | IPR033389 | - | |
Lsi07g00734 | 730 | Pfam | AUX/IAA family | 666 | 702 | IPR033389 | - | |
Lsi07g00734 | 730 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 246 | 717 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi07g00734 | 730 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 2 | 227 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi07g00734 | 730 | MobiDBLite | consensus disorder prediction | 517 | 541 | - | - | |
Lsi07g00734 | 730 | PANTHER | AUXIN RESPONSE FACTOR 9 | 246 | 717 | - | - | |
Lsi07g00734 | 730 | CDD | B3_DNA | 108 | 262 | IPR003340 | GO:0003677 | |
Lsi07g00734 | 730 | MobiDBLite | consensus disorder prediction | 558 | 623 | - | - | |
Lsi07g00734 | 730 | Gene3D | - | 107 | 263 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02036 | Lsi-Chr2:26424205 | Lsi07g00734 | Lsi-Chr7:7957652 | 7.47E-29 | dispersed | |
Lsi07g00734 | Lsi-Chr7:7957652 | Lsi09g00162 | Lsi-Chr9:1700937 | 0 | dispersed | |
Lsi07g00734 | Lsi-Chr7:7957652 | Lsi02g00922 | Lsi-Chr2:8889744 | 7.59E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25642 | PF02362 | B3 | 1.10E-13 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00734 | K14486 | - | csv:101213942 | 1209.51 |