Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00746 ATGACCGAACCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAATCCAACCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGCGTCCAATCCCATGTCCCCTTTTCTCCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGACGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTCGTTTTGATGTCTGCTAATGCCATTGTTACTTCAAAGATTGGATATATGATTATCTATGGGGTTTCTGGATGTACTTCCAATTCACATTCCGTACCGCAAAAGCCGACTGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGATTACTGCCATCAGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCTGGGCAACCTTTTGTCCTTGATTCGCAGAGCAATGGACTTCATCAGTATCGGATGGCCTCTTTGATGTTTATGTTTTCCTTGGATGCTGAGCAGGATGGATATCTTGGGCTTCCTGGTCGTGTTTTCCAACAAAAATTGCCTGAGTGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGACTTAGTCACGCTCTAAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCCGGGCACTCTTGTCTTGGTGTTCTCGAGCTAATCATGACGTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGTAAAGCTCTTAAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATAATCAGGTCAGTGGTGAAAAGTTGTATATTTGCAATGAAGGTCGTCAGAATGCACTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAACTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAAAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCAATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATCGTTGATTATCAGGAACAAAAGACATTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCTTCTGTGATCAACCTTGAGGACAAGGAAGGACTTGTCGAGATCATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGACTTGAATATATTCAAATTCCTCGACCTGTGGAATTGCCACCTGCTTCTGATGCCATGCCGAATGCAGTAGAGGTAGTTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCTCCAAAGGATGAAAACAGTAGTGCTCGGGATGGAGAAAGCCATAACCCCATTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACGTCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAAGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTCAATCGCTCACTTTCAAAGCTGAAGCGCGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTCTGGCCACAAGTCCACTTCCTGTTACTGTTAGCTCGAGTTCTCATCCTTTAACTCCAGATGGGTCTAATCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCAATTACACAGAGGAGTGTTGAGTCCAGAAGAACCATTTCACGAACAAAACGGATTCCTGCCAAAATTTGGAAATGGTTTGAACAATTTTAGAGCAGGGAGTGTATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCACGGTTCATGCCAAGGCAGTCCTGCAAATGATAGTGCACTAGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATACAATCGATAAACTGAATATATCAGCACCTACTTGTCCAATCCCGGATACGCTCGTGATGGTTGAGCCGGAGGAACCATTTGGAGGAATGCTAATTGAGGATGCAGGAAGTTCTAAGGATTTAAAAAATCTTTGCGCTTCTGTCGCTGATGCGGTTCTTGACGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTTCTGATATAGCTCTGAGACAACCAATGGACTCTGTTTGTCACACAGTCCCTCATATATCACTACGGCAAGAACCAAGGAGGATGACTATCAAGGCCACATATAAGGAAGATATTATTCGATTTCGAATTCCCGTGAGTTCTGGCATCGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCGTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAGTCGTCAGGTAGCAATATAATAAGATTGTCGGTTCATGATTTAAATGTCAATCTTGGAAGTTCTTGTGAGAGTACAGGAGAGTGA 3069 43.73 MTEPDSDHPSPLFPKSNHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLVLMSANAIVTSKIGYMIIYGVSGCTSNSHSVPQKPTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLMFMFSLDAEQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALKAVNLKSSEILDHPNNQVSGEKLYICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKNCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGKAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASVINLEDKEGLVEIIQASRNGGFESRLEYIQIPRPVELPPASDAMPNAVEVVALETLQQQSLMVHDAPKDENSSARDGESHNPIPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPDGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRGVLSPEEPFHEQNGFLPKFGNGLNNFRAGSVSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVAFHTIDKLNISAPTCPIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPSDIALRQPMDSVCHTVPHISLRQEPRRMTIKATYKEDIIRFRIPVSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDLNVNLGSSCESTGE 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8165569 8169609 + Lsi07G007460.1 Lsi07g00746 667168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00746 1022 ProSiteProfiles PB1 domain profile. 927 1009 IPR000270 GO:0005515
Lsi07g00746 1022 Pfam PB1 domain 928 1008 IPR000270 GO:0005515
Lsi07g00746 1022 MobiDBLite consensus disorder prediction 1 25 - -
Lsi07g00746 1022 PANTHER PROTEIN NLP7 20 1020 - -
Lsi07g00746 1022 ProSiteProfiles RWP-RK domain profile. 609 690 IPR003035 -
Lsi07g00746 1022 Gene3D - 925 1008 - -
Lsi07g00746 1022 SMART PB1_new 927 1009 IPR000270 GO:0005515
Lsi07g00746 1022 CDD PB1_NLP 928 1008 IPR034891 -
Lsi07g00746 1022 PANTHER PROTEIN NLP8 20 1020 IPR045012 GO:0003700
Lsi07g00746 1022 MobiDBLite consensus disorder prediction 786 814 - -
Lsi07g00746 1022 SUPERFAMILY CAD & PB1 domains 921 1009 - -
Lsi07g00746 1022 MobiDBLite consensus disorder prediction 703 745 - -
Lsi07g00746 1022 MobiDBLite consensus disorder prediction 582 620 - -
Lsi07g00746 1022 Pfam RWP-RK domain 622 670 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00746 - - - csv:101212500 1902.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01398 Lsi-Chr4:21775577 Lsi07g00746 Lsi-Chr7:8165569 6.64E-08 dispersed
Lsi07g00359 Lsi-Chr7:3818228 Lsi07g00746 Lsi-Chr7:8165569 1.27E-20 dispersed
Lsi07g00746 Lsi-Chr7:8165569 Lsi08g00840 Lsi-Chr8:16862633 3.15E-09 dispersed
Lsi07g00746 Lsi-Chr7:8165569 Lsi04g01806 Lsi-Chr4:25286568 9.14E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g00746 . 209 1022 NLP Transcription Factor Family AT1G64530 50.9 1.2e-215 746.5
Lsi07g00746 . 288 1022 NLP Transcription Factor Family AT4G24020 54.3 1.9e-197 686.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25643 PF00564 PB1 4.20E-19 CL0072 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00746 Lsi_Chr07 FPKM 28.427589 32.564342 7.583038 7.00146 56.738377 55.414082 56.198498 6.431809 5.904526 5.2838