Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00757 ATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTATGGCAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTTCAGTGGAGACCAGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGCGGGTTCATTGCACCTGAACTTGGGAAGCTAGATCAATTGAAGAGCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCTATGAGCTGGGAGACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCTCTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTTGTCGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGTGTCATTTGCAAAGACGATAATACTGGATCTGGAACAAATTCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTACTCATAAGTGCATCAGCTACAGTGGGGGCTCTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGCGAAGGATGTTGGTGGAGGTGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGACTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGCATCTACACTTTGCACAGTCAGTGATTTCAGCATCATAACCTTGCCCCTTGGATGA 1491 42.72 MGICLVKCSGLLVLHVLLLCMAMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKSLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPYELGDLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNSEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLAKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPASTLCTVSDFSIITLPLG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8257843 8264656 - Lsi07G007570.1 Lsi07g00757 667179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00757 496 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Lsi07g00757 496 Pfam Protein kinase domain 312 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00757 496 PANTHER RECEPTOR-LIKE PROTEIN 55 3 478 - -
Lsi07g00757 496 SUPERFAMILY Protein kinase-like (PK-like) 293 484 IPR011009 -
Lsi07g00757 496 Gene3D Transferase(Phosphotransferase) domain 1 386 488 - -
Lsi07g00757 496 SUPERFAMILY L domain-like 30 191 - -
Lsi07g00757 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Lsi07g00757 496 SMART serkin_6 310 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00757 496 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Lsi07g00757 496 Gene3D Phosphorylase Kinase; domain 1 285 385 - -
Lsi07g00757 496 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Lsi07g00757 496 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 478 IPR031071 GO:0004672|GO:0005524|GO:0030244
Lsi07g00757 496 ProSiteProfiles Protein kinase domain profile. 310 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00757 496 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00318 Lsi-Chr2:2728480 Lsi07g00757 Lsi-Chr7:8257843 5.49E-146 dispersed
Lsi04g01861 Lsi-Chr4:25741130 Lsi07g00757 Lsi-Chr7:8257843 1.45E-153 dispersed
Lsi07g00757 Lsi-Chr7:8257843 Lsi03g00201 Lsi-Chr3:2629350 4.11E-82 dispersed
Lsi07g00757 Lsi-Chr7:8257843 Lsi06g01488 Lsi-Chr6:25343556 8.62E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83781 PF00069 Pkinase 4.30E-34 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00757 - - csv:101205992 933.71