Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00769 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGCTCGCTGCCGGCGGCGGAGACTCTCTCCTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTTGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATGATGATTCTGAATGTGAGAACAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAGGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGAGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGAGCTTGATGGATGGGATCAAGCTGGTGTTGCTGCTACAACCCCTAGAGCTGGAAGTACCTCTGCTCGCGTATCTTCCCTGCAATCGTTGAACTCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCTGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGATGGGCCTCATTTATCAGACAGACCTGCTAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGACCTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGTTCTGCTAATTTTAGGTTAAATACACAACCTTCTAGTCTTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTGCTTGTGATAATTCTAGAGTAGGGTCAAATGGAAACCTTTCCCATCCTCGAACTCTACCTGAAAATGAAAGCAGCGAGATTAGACAATCTGACAGACGGACTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGGACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAAATGAGGGCTTTGGCATCTGAAGAAAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGAAGTGGAAACTACTCGACCTAGAGAAGCTAGATATCATGATTTGCTGGAACACAGGTCAAATTTCCTCGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAACATAGAACTGGTCATTGTACTTGTCGTGTCAATAATCGTGACACAAATATAAATGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCCGCCTGCACCAAACGATGTTGTAGATTCTTTGCCTGTTAAATTCTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGA 1767 45.1 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDDDSECENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVELDGWDQAGVAATTPRAGSTSARVSSLQSLNSSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDGPHLSDRPARGVGGQDETQQGRDLLPASLASETHTQCYGDSSANFRLNTQPSSLSDNLQDNQSVSSTHDMAGACDNSRVGSNGNLSHPRTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAEMRALASEENGMTSPTTSGYPASSLSSSLFSTQDFEVETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRVNNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSPPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8383086 8386744 + Lsi07G007690.1 Lsi07g00769 667191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00769 588 MobiDBLite consensus disorder prediction 274 293 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 222 293 - -
Lsi07g00769 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 578 IPR013083 -
Lsi07g00769 588 CDD RING-H2_PA-TM-RING 530 573 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 222 273 - -
Lsi07g00769 588 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 161 200 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 1 18 - -
Lsi07g00769 588 Pfam Ring finger domain 530 573 IPR001841 -
Lsi07g00769 588 SUPERFAMILY RING/U-box 509 579 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 1 78 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 48 65 - -
Lsi07g00769 588 MobiDBLite consensus disorder prediction 161 179 - -
Lsi07g00769 588 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 580 - -
Lsi07g00769 588 SMART ring_2 531 572 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01645 Lsi-Chr3:27631109 Lsi07g00769 Lsi-Chr7:8383086 1.03E-10 dispersed
Lsi06g01060 Lsi-Chr6:20809341 Lsi07g00769 Lsi-Chr7:8383086 1.68E-45 dispersed
Lsi07g00769 Lsi-Chr7:8383086 Lsi07g01384 Lsi-Chr7:20105016 1.93E-13 dispersed
Lsi07g00769 Lsi-Chr7:8383086 Lsi04g02261 Lsi-Chr4:29645465 5.87E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00769 - - csv:101213468 1003.05