Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00787 ACCCAAAACTTCCATTCATATTATTATTTATACACTTTTCTTCTTGTATTCCCCATCTCCATATACTCCAAACCCATAGTACCAATGAATAATATTATCAAGTATAACAATGTCCTTACCAATCTTGCTCTATCTTCTCTTCTCCCTCTCCTTGCTTTCCTCTTCATGATCAATCCCACCCCTCCCTTCCTTTCCAATCTTCTTGTCTTCCGTGATCTCGTCGACTGTCCTCACCATCACCATCACCATCACCACCACCATCACCATCATCGTCATCATAAAAACCCAGCTGACGAAGAAGACCAAACAATGATAAATTCCATTTGTGACACTTTTCCGACCACTCTCCTCCCACCAGAAACTACCAACACTTCTGTTTTTTGTGTCGATCGAAACGGTTGTTGCAACTTCACAACGGTTCAAGCAGCAGTCGACGCTGACAAAGCTATACAACAACCGCCATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACCTTTTATAGTGGCTCTGTCCAAATTATCCTCACTTAATTTTGAGCAAATATTTTTGGGGCTTTGGCAGAATGTGGCGCCAATTCCTGGGCCGGGCGACGTCGGAGCGCAGGCGGTGGCGATTAGAATCGGCGGAGACCAGGCGGCGTTTTGGAGCTGTGGATTCTTCGGCGCTCAAGACACTCTCCACGACGATCGTGGCCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTTCCGCAAGGATCGAAGTTTGTGAACGGTGCGGTGACGGCGCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTGCTTTTGTTAATTGCAGCATCGGCGGGACCGGTAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGCCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCATGGAACAGGAGCCAATACGAGCTCAAGGGCTCCCTTTGTTCAGAGGCTTAATGATACTCAAGTTTCCCCTTTCCTCAACTTGTCTTTCATTGATGCTGACCAATGGCTCCAACCTTATTCATTGTTCTAA 1164 48.28 TQNFHSYYYLYTFLLVFPISIYSKPIVPMNNIIKYNNVLTNLALSSLLPLLAFLFMINPTPPFLSNLLVFRDLVDCPHHHHHHHHHHHHHRHHKNPADEEDQTMINSICDTFPTTLLPPETTNTSVFCVDRNGCCNFTTVQAAVDADKAIQQPPLFGMTLPILPMAPFIVALSKLSSLNFEQIFLGLWQNVAPIPGPGDVGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAPEGWNDFNDPARDHGTGANTSSRAPFVQRLNDTQVSPFLNLSFIDADQWLQPYSLF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8644786 8649045 - Lsi07G007870.1 Lsi07g00787 667209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00787 387 Gene3D - 173 386 IPR012334 -
Lsi07g00787 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 188 385 - -
Lsi07g00787 387 PANTHER PECTINESTERASE 8-RELATED 188 385 - -
Lsi07g00787 387 PANTHER PECTINESTERASE 8-RELATED 63 147 - -
Lsi07g00787 387 SUPERFAMILY Pectin lyase-like 198 384 IPR011050 -
Lsi07g00787 387 ProSitePatterns Pectinesterase signature 2. 242 251 IPR033131 -
Lsi07g00787 387 Pfam Pectinesterase 198 340 IPR000070 GO:0030599|GO:0042545
Lsi07g00787 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00787 Lsi-Chr7:8644786 Lsi06g00224 Lsi-Chr6:2582297 1.71E-65 dispersed
Lsi07g00787 Lsi-Chr7:8644786 Lsi03g01970 Lsi-Chr3:31110745 3.90E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00787 - - bhj:120090174 531.176