Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00790 ATGGCGGCCACTTCCCTTTCGAACCTGCCTTCTGCTCTCTTCCATGGAAATCTGCAGAGAAATGAATTTGGGTTTGTGGGTATGCCGAGACAACCCACCAAGTATCTCAAATCCAATCATAGAGCTCCGGTTGTGAGATGTCAATCAACTGAAGTTGATGGACCGAAAACAAAAAGAAATCTACTCGACAATGCCAGCAATCTTCTTACCAATTTGTTAAGTGGTGGAAATTTGGGATCTATGCCAATAGCTGAAGGTGCAGTCTCTGATTTGTTTAGCCGCCCACTCTTCTTTGCACTGTATGATTGGTTCTTAGAGCATGGATCTGTTTATAAACTTGCCTTTGGACCAAAAGCCTTTGTTGTTGTATCAGATCCTATTGTGGCAAGATATATTCTTCGTGAAAATGCATTTGGTTATGACAAGGGAGTGCTTGCTGATATTCTAGAACCAATAATGGGTAAAGGACTAATACCAGCTGATCTTGACACTTGGAAGCAGAGGAGACGAGTTATAGCTCCTGGATTCCATGCCTTATACTTGGAAGCTATGACCAAAGTGTTCACTGATTGTTCAGAACGATCAATACTGAAATTGGAGAAGCTTCTTGGAGAAGGTGAACTTCAGGAGGATAAAACCATTGAGTTGGATATGGAAGCAGAGTTTTCGAGTTTGGCTCTTGATATCATTGGACTTGGTGTTTTCAACTATGATTTTGGTTCTGTAACCAAAGAATCCCCAGTGATTAAGGCTGTGTATGGAACCCTTTTTGAAGCAGAGCATAGATCAACTTTCTATATCCCATACTGGAAAGTACCTTTGGCAAGGTGGATAGTCCCAAGGCAGCGTAAATTCCATAGTGACCTTAAGGTTATTAATGACTGTCTTGATGGACTAATACGAAATGCAAGAGAAACCCGAGAGGAAGCCGATGTTGAGAAATTGCAGCAGAGGGACTATTTAAATCTCAAGGATGCCAGTCTTTTGCGTTTCCTAGTTGATATGCGGGGAGTTGATGTCGATGATCGGCAGCTTAGGGACGATCTGATGACAATGCTTATTGCCGGGCACGAAACAACTGCTGCCGTGCTTACATGGGCTGTTTTTTTGCTTGCACAAAACCCTTCAAAAATGAAAAAAGCTCAGGCAGAGATCGATTTGGTTCTTGGCAAGGGAAGGCCAACTTTTGAATTACTTAAAGGATTGAAGTACATCAGACTTATCCTTGCAGAGACTCTTCGTTTGTTTCCCCAGCCACCATTGCTAATAAGACGAGCACTCAAACCGGATACATTGCCAGGAGGATACAATGGTGACAAAAATGGGTATGCAATACCTGCAGGAACTGACATCTTCATCTCTGTTTACAACCTCCACAGATCTCCATACTTCTGGGAAAACCCTCAAGAATTTGAACCAGAGAGATTTCAAGTAAAGAGGGCAAGCGAGGGAATTGAAGGATGGGACGGTTACGACCCATCAAGAAGCCCTGGAGCTCTATACCCAAACGAGATTGTATCAGACTTTTCCTTCTTACCATTTGGTGGAGGACCTAGAAAATGTGTGGGGGATCAATTTGCTCTAATGGAGTCAACTATAGCACTGGCCATGTTACTGCAGAAGTTTGATGTGGAACTAAGAGGAAGTCCAGAATCTGTGGAACTTGTCACTGGGGCAACTATACATACCAAAAGACCAACAACTACAAGATTCTCAGAATCGCTTGCAAATTTTCATGGTAGGAAGAGAGCCTTAAGCAGAAATATACTTGTTAAGGACTCTTGGCAGGGCTTGGGATTATAA 1803 42.71 MAATSLSNLPSALFHGNLQRNEFGFVGMPRQPTKYLKSNHRAPVVRCQSTEVDGPKTKRNLLDNASNLLTNLLSGGNLGSMPIAEGAVSDLFSRPLFFALYDWFLEHGSVYKLAFGPKAFVVVSDPIVARYILRENAFGYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMTKVFTDCSERSILKLEKLLGEGELQEDKTIELDMEAEFSSLALDIIGLGVFNYDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIRNARETREEADVEKLQQRDYLNLKDASLLRFLVDMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEIDLVLGKGRPTFELLKGLKYIRLILAETLRLFPQPPLLIRRALKPDTLPGGYNGDKNGYAIPAGTDIFISVYNLHRSPYFWENPQEFEPERFQVKRASEGIEGWDGYDPSRSPGALYPNEIVSDFSFLPFGGGPRKCVGDQFALMESTIALAMLLQKFDVELRGSPESVELVTGATIHTKRPTTTRFSESLANFHGRKRALSRNILVKDSWQGLGL 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8703121 8710547 + Lsi07G007900.1 Lsi07g00790 667212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00790 600 Pfam Cytochrome P450 104 550 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 SUPERFAMILY Cytochrome P450 92 571 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS E-class P450 group I signature 104 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS E-class P450 group I signature 364 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS E-class P450 group I signature 511 521 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS E-class P450 group I signature 521 544 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS E-class P450 group I signature 344 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS P450 superfamily signature 355 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS P450 superfamily signature 521 532 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS P450 superfamily signature 407 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PRINTS P450 superfamily signature 512 521 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 514 523 IPR017972 GO:0005506|GO:0016705
Lsi07g00790 600 PANTHER CYTOCHROME P450 FAMILY 4 76 564 - -
Lsi07g00790 600 Gene3D Cytochrome P450 80 583 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00790 600 PANTHER CYTOCHROME P450 97B3, CHLOROPLASTIC 76 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00806 Lsi-Chr5:11988067 Lsi07g00790 Lsi-Chr7:8703121 4.46E-121 dispersed
Lsi07g00790 Lsi-Chr7:8703121 Lsi06g00316 Lsi-Chr6:3599628 1.09E-39 dispersed
Lsi07g00790 Lsi-Chr7:8703121 Lsi03g00243 Lsi-Chr3:3057964 3.55E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00790 K24543 - csv:101210292 1034.25