Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00800 ATGCTTCGTAGCTTAATTCCTCATTCCCCCATCAATTCCACTTCCAATTCCCCTTCCTCCATGAAGTCCAAGCGCTCCGATCCCGACTCCTCCCCTGACCACCCTTCCTCCAAGAGGCTCAATTCCCGTCCCAACAACTTCTCCGCCGCCGGTAAGGCCGTCCACCACCCTGACTTGGAAGACGACGACGATGAGGACCCATCTCTCCTTGACGGCAGTGAGTCCACTGGTTTGAGATTGCTAGGCCTTCTCCTTCAATGCGCCGAGTGCGTCGCCATCGATAATCTCCAGGAGGCCAACGATCTCTTGCCGGAGATCTCCGAGCTCTCCTCGCCCTTCGGTACCTCCCCTGAGCGCGTCGGCGCCTACTTCGCCCACGCGCTTCAGGCTAGAGTCATAAGCTCCTGCTTGGGAACCTACTCGCCCTTGACCATCAGAACGCTGAATCAAACTCAGTCGCAGAGAATTTTCAACGCCCTCCAATCCTACAATTCCATCAGTCCGTTGATTAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGTGAAGATCGAGTCCACGTAATCGACCTTGACGTAATGCAAGGTCTCCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGTCCGAAGAAGATCCAATCCTTACGAATCTCCGGCTTCGGATCCTCTTCCGATTTGCTTCAATCAACCGGACGGAGACTCGCCGATTTCGCAACGTCTCTGGGTCTCCCCTTCGAATTCCATCCAGTAGAAGGCAAAATCGGGAACCTAACAAACCCTAATCAACTGGAATTAAGAGCCGGCGAGGCAGTGGTAGTTCACTGGATGCACCATTGCTTGTACGACGTAACAGGAAGCGATATAGGTACGCTTAGATTACTTTCAACTCTAAAACCAAAACTAATCACCATTGTTGAACAAGATCTGAGTCATGGGGGCAGTTTTCTAGGAAGATTTGTAGAGGCTTTGCATTATTACAGCGCGTTATTTGACGCGCTTGGTGATAGTTTAGCCATGGATAGTCTGGAAAGACATGTGGTGGAGCAACAATTGTTTGGGTGTGAGATTAGAAACATTATCGCCGTTGGGGGACCCAAAAGAACTGGTGAAGTTAAGGTGGAAAGGTGGGGCGATGAACTCAAACGGGTCGGGTTTAAACCCGTGTCTCTTGGGGGTAACCCGGCTGCTCAGGCCAGCTTGCTTCTCGGAATGTTCCCTTGGAAAGGCTATACTCTGGTTGAAGAAAATGGGTGCCTTAAACTTGGATGGAAGGACCTATCTCTTCTCACAGCCTCGGCCTGGCAGCCCTCCGATTGA 1335 51.69 MLRSLIPHSPINSTSNSPSSMKSKRSDPDSSPDHPSSKRLNSRPNNFSAAGKAVHHPDLEDDDDEDPSLLDGSESTGLRLLGLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSDLLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPNQLELRAGEAVVVHWMHHCLYDVTGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFKPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8898817 8900151 - Lsi07G008000.1 Lsi07g00800 667222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00800 444 MobiDBLite consensus disorder prediction 7 25 - -
Lsi07g00800 444 PANTHER SCARECROW-LIKE PROTEIN 23 21 441 - -
Lsi07g00800 444 ProSiteProfiles GRAS family profile. 71 441 IPR005202 -
Lsi07g00800 444 MobiDBLite consensus disorder prediction 1 71 - -
Lsi07g00800 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 441 IPR005202 -
Lsi07g00800 444 Pfam GRAS domain family 82 441 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01649 Lsi-Chr1:15022769 Lsi07g00800 Lsi-Chr7:8898817 5.24E-161 dispersed
Lsi02g02161 Lsi-Chr2:28040772 Lsi07g00800 Lsi-Chr7:8898817 3.03E-102 dispersed
Lsi07g00800 Lsi-Chr7:8898817 Lsi09g00929 Lsi-Chr9:11528705 7.66E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25648 PF03514 GRAS 1.10E-116 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00800 - - bhj:120092974 771.541