Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00826 ATGAATATAACCTTGAGAACTACTATCTATGATCAGGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCCGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTCGTCTACAATTACCTTGAGAATAATAGCCTTGCACAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACAAGGTCTAAGATTTGCATTGGAATTGCCCGTGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCGAGCAACATTCTTCTTGATCACGACCTCTCTCCTAAAATTTCAGATTTTGGTCTCGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCGATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTTGGAGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACAAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTACGAGCGAGGAGAGCTCGTTCTGCTAGTTGATACGTCCTTAAACGGTAACTACGATGCTGAAGAGGCTTGTAAATATCTAAAGATAGGTCTACTTTGCACGCAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACGGGCGAGATGAGTATTGAAGATAGAAAGATAACGAAACCGGGGTTGATTTCGGACTTCATGGATCTAAAAGTAAGGGATCCAGAGGAAAAGAAAGGGAATAGAGAGGGGATGTCTTCTGATAGTCTATCCTCTGGAACAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCGTCCTCAACTGTGACATCTGCAACCTTCACTGCACCATATGACAGGAATACTTTCTCATCTTTACTGTGA 1047 41.74 MNITLRTTIYDQGKLKDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDTSLNGNYDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLISDFMDLKVRDPEEKKGNREGMSSDSLSSGTNILGNSTMSSEASSTVTSATFTAPYDRNTFSSLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9192474 9194955 + Lsi07G008260.1 Lsi07g00826 667248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00826 348 SUPERFAMILY Protein kinase-like (PK-like) 13 267 IPR011009 -
Lsi07g00826 348 SMART serkin_6 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00826 348 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 12 331 - -
Lsi07g00826 348 Gene3D Phosphorylase Kinase; domain 1 7 72 - -
Lsi07g00826 348 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 331 - -
Lsi07g00826 348 Gene3D Transferase(Phosphotransferase) domain 1 73 281 - -
Lsi07g00826 348 PIRSF TyrPK_CSF1-R 95 211 - -
Lsi07g00826 348 PIRSF TyrPK_CSF1-R 232 337 - -
Lsi07g00826 348 PIRSF TyrPK_CSF1-R 7 75 - -
Lsi07g00826 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Lsi07g00826 348 MobiDBLite consensus disorder prediction 305 323 - -
Lsi07g00826 348 ProSiteProfiles Protein kinase domain profile. 1 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00826 348 MobiDBLite consensus disorder prediction 295 323 - -
Lsi07g00826 348 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00826 Lsi-Chr7:9192474 Lsi07g00871 Lsi-Chr7:9878677 3.89E-149 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83783 PF00069 Pkinase 3.90E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00826 - - csv:101216433 612.453