Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00832 ATGGACGACGATTACTCCATCTTCCCTCCCGATTCAGATCTCGATTTCAGCTTCACTTCCACCGCCACCGACCGCACCTTCACCACCTCCTCCAGCGCCCGCACCAGTCTTGCTCGGAGCAGTCTAACACTCAGCTTCAATGAATCTCGTCTCTCTGCCGCTGCAGCCGCTGCTGCTGTCGTTAATCTCCGCCCCCACCGCCATTCTGACCCTCACTGGTCCGCCATTAAAGCCGCTACTACTCTCTCTTCCGACGGCCATCTTCACCTCCGTCACCTGAAACTCATCCGCCATCTCGGCACCGGCAACCTCGGCCGTGTGTTCTTGTGTCATTTGAGAGACAACGATCACGCCAGTTTCGCGCTGAAAGTTGTGGATAAGGAAGCTCTCAGTAACAAGAAGCTTTTGCAGGTCCAAACGGAAGCCGAGATTCTCGCTTCTTTGGACCACCCTTTTCTCCCAACTCTCTACGCGCGTCTTGACGTCTCTCACTACACGTGCCTCCTTATCGACTATTGTCCTGCCGGTGACCTCCACTCACTCCTCCGCAAACAGCCTGGTAACCGCCTTTCTGTCGCGGCCGCGAGATTCTTCGCCGCCGAGGTCCTGGTGGCGCTCGAGTATCTTCACGCGCTTGGGATCGTGTATCGCGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGACTTGTGTTTTAAGTCTGACGTGCTCCCTACTTTTCACACGTGGACTCGCCCGGGACCACAGGCTACTGGCTGCTGCTTCGGGTGGAGGACGGCGGAGGAGGAAGACGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACGGCGGCGTTTTCGAAGTCGTGCGTGGGGACTCATGAGTACTTGGCGCCGGAGTTAGTGGCCGGTGGTGGCCACGGCAACGGCGTCGACTGGTGGGCTTTTGGGGTGTTCGTTTACGAGCTTCTGCACGGGACCACGCCGTTTAAAGGAGTAAATAAGGAGGGTACATTAAGGAACATTGCGATGTCGGAGGGGGTGAAGTTCCGGCCGGCGGCAGAGGAAGAGGAGGGGATGGCGGAGGCGAGAGATCTGATAGAGAGGCTGCTAGTGAAAGATCCGGCGAGGCGGTTGGGTTCCGGCAAAGGGGCGACGGAGATCAAACGGCATCCGTTTTTCGACGGGATAAAATGGCCGTTGATCAGGACATATAGGGCGCCTGAGGTGTATGGGCTGATGAGAAAAGCCAGATCCCACGTGAGCCACGTGACAGGCGTGACCCACCGCATGCGGCGGCGGGGCTGGTGGAACTGGAGGAAGCTCATCAGCAACCGTTTAATTAAAAATGGAAGTTCCAGTAAATCTCATACCAATACCAATTATTATAGTTATAGCTCCAAAAATAAGACGGGTTGA 1422 56.12 MDDDYSIFPPDSDLDFSFTSTATDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAAAAVVNLRPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLLQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVAAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVLPTFHTWTRPGPQATGCCFGWRTAEEEDEIVGEFVAEPTAAFSKSCVGTHEYLAPELVAGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIAMSEGVKFRPAAEEEEGMAEARDLIERLLVKDPARRLGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWRKLISNRLIKNGSSSKSHTNTNYYSYSSKNKTG 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9297927 9299348 + Lsi07G008320.1 Lsi07g00832 667254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00832 473 PANTHER FLIPPASE KINASE 1-RELATED 10 425 - -
Lsi07g00832 473 SUPERFAMILY Protein kinase-like (PK-like) 69 424 IPR011009 -
Lsi07g00832 473 ProSiteProfiles Protein kinase domain profile. 93 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00832 473 Coils Coil 354 374 - -
Lsi07g00832 473 MobiDBLite consensus disorder prediction 451 473 - -
Lsi07g00832 473 Pfam Protein kinase domain 95 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00832 473 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 10 425 - -
Lsi07g00832 473 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Lsi07g00832 473 CDD STKc_phototropin_like 91 411 - -
Lsi07g00832 473 Gene3D Transferase(Phosphotransferase) domain 1 288 408 - -
Lsi07g00832 473 Gene3D Transferase(Phosphotransferase) domain 1 177 242 - -
Lsi07g00832 473 SMART serkin_6 93 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00832 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00832 Lsi-Chr7:9297927 Lsi10g01180 Lsi-Chr10:16085006 1.77E-101 dispersed
Lsi07g00832 Lsi-Chr7:9297927 Lsi01g00506 Lsi-Chr1:4134269 3.72E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83784 PF00069 Pkinase 1.10E-53 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00832 - - bhj:120087146 843.573