Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00833 ATGAGCAAATTAGAGGAGTTGGTTTTGTTGGACTTGTGGTTGAGCCCTTTTGCAATGAGAGTGAGGGTGGCTTTGGCAGAGAAAGGCATAAAATATGAAGCAAAAGAGGAAGATTTGAGCAACAAAAGCACTATACTTCTGGAGATGAATCCTATTTACAAACAAATCCCAGTTTTGATTCACAAAGGGAAACCCATTATTGAATCCTCTCTAATAGTTGAATATATTGATGAGGTTTGGAGTGATGATGAGGGAGCTTATATTAATTTGCTTCCTTCTCATCCTTTTGAGAAAGCCCATGCTAGGTTTTGGGTTGACTATGTGGACAAGAAGATTTATCCCATTGGAAGTAAGCTATGGAATAGAGAGAAGACAAAAGAGGAGAAAGAAGCAGCAGCAAAGGAACTGTTGGAGTGCTTTAAGCAACTAGAAGAAGAGCTTGGAGAAAAAGACTATTTTGGTGGCCAAACATTTGGGATTATAGATATTGCTCTCATTCCATTTTACAGCATGTTTCTTGCATTCAAATTGCTTGGAAATTTGGACTTAGAAGTTGAATGTCCCAAGATCCTTCAATGGGTTAAGAGAAAGGATGACCATGGAAATGGTTCCACGGCTCGTCATTGCTACGATGAAACGTCGATCGATATCGGTACTCGATACTATTTTCGAGAATGA 678 39.09 MSKLEELVLLDLWLSPFAMRVRVALAEKGIKYEAKEEDLSNKSTILLEMNPIYKQIPVLIHKGKPIIESSLIVEYIDEVWSDDEGAYINLLPSHPFEKAHARFWVDYVDKKIYPIGSKLWNREKTKEEKEAAAKELLECFKQLEEELGEKDYFGGQTFGIIDIALIPFYSMFLAFKLLGNLDLEVECPKILQWVKRKDDHGNGSTARHCYDETSIDIGTRYYFRE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9303739 9309538 - Lsi07G008330.1 Lsi07g00833 667255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00833 225 Gene3D Glutaredoxin 4 93 - -
Lsi07g00833 225 Pfam Glutathione S-transferase, C-terminal domain 128 196 - -
Lsi07g00833 225 SFLD Main.3: Omega- and Tau-like 5 199 IPR045073 -
Lsi07g00833 225 Coils Coil 126 146 - -
Lsi07g00833 225 CDD GST_C_Tau 95 196 IPR045074 GO:0004364|GO:0006749
Lsi07g00833 225 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 198 - -
Lsi07g00833 225 SUPERFAMILY GST C-terminal domain-like 89 197 IPR036282 -
Lsi07g00833 225 Gene3D - 94 212 - -
Lsi07g00833 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 198 IPR045073 -
Lsi07g00833 225 SFLD Glutathione Transferase (cytosolic) 5 199 IPR040079 -
Lsi07g00833 225 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Lsi07g00833 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 94 221 IPR010987 -
Lsi07g00833 225 CDD GST_N_Tau 7 80 - -
Lsi07g00833 225 SUPERFAMILY Thioredoxin-like 7 113 IPR036249 -
Lsi07g00833 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00833 Lsi-Chr7:9303739 Lsi07g00840 Lsi-Chr7:9392594 3.24E-79 dispersed
Lsi07g00833 Lsi-Chr7:9303739 Lsi07g00834 Lsi-Chr7:9325883 1.24E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00833 K00799 - oeu:111389263 248.054