Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00834 ATGGCGGACGAAGTGAAGATGTTGGATTTTTGGCCCAGCATGTTTGGAATGCGAGTCAGAGTAGCTCTGGCTCTGAAGGGCGTGGCGTATGAATATGTGGATGAAGATCTGAGGAACAAGAGCCCTTTACTTCTTCAAATGAACCCAATTCATAAGAAGATCCCTGTTCTTGTTCATAATGGAAAACCCATTTGTGAATCTTCCATTATTGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCTCCTCTGTTGCCGTCTGATCCTTATCAGAGAGCTCAGGCCAGATTTTGGGTAGATTTCATCGACAAGAAGCTTTTTGATGCTGGAAGGAAAATTTGGACGAGCAAAGGAGAAGAGCAAGAAGAAAGTAAGATGGAGGTAATAGGAATATTGAAGCAAATGGAAGAAGTAATAATTGGGGAAAAGGGTTACTTTGGAGGTGAGTGTTTGGGATATTTAGACATTGTTTTGATTGGATACTACACTTGGTTTTATGCCTATGAGACAATTGGGAACTTTAGCATTGAGGCTGAATGTCCAAAGATAATGAGTTGGGTGAAGAGATGCTTACAAAATGAGAGTGTTTCTAAGTCTCTGCCTGACCCCAAGAAGGTTTGTGATTTTGTGCTTCAAATGAAGACAAAGTATGGCCTTGGCTAA 663 40.57 MADEVKMLDFWPSMFGMRVRVALALKGVAYEYVDEDLRNKSPLLLQMNPIHKKIPVLVHNGKPICESSIIVEYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKLFDAGRKIWTSKGEEQEESKMEVIGILKQMEEVIIGEKGYFGGECLGYLDIVLIGYYTWFYAYETIGNFSIEAECPKIMSWVKRCLQNESVSKSLPDPKKVCDFVLQMKTKYGLG 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9325883 9327119 - Lsi07G008340.1 Lsi07g00834 667256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00834 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Lsi07g00834 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 -
Lsi07g00834 220 CDD GST_N_Tau 5 78 - -
Lsi07g00834 220 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Lsi07g00834 220 Pfam Glutathione S-transferase, C-terminal domain 128 189 - -
Lsi07g00834 220 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 211 - -
Lsi07g00834 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Lsi07g00834 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Lsi07g00834 220 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Lsi07g00834 220 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Lsi07g00834 220 Gene3D - 88 220 - -
Lsi07g00834 220 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Lsi07g00834 220 Gene3D Glutaredoxin 1 87 - -
Lsi07g00834 220 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00069 Lsi-Chr2:589600 Lsi07g00834 Lsi-Chr7:9325883 8.82E-24 dispersed
Lsi07g00834 Lsi-Chr7:9325883 Lsi07g00840 Lsi-Chr7:9392594 2.89E-131 dispersed
Lsi07g00836 Lsi-Chr7:9337219 Lsi07g00834 Lsi-Chr7:9325883 5.69E-57 dispersed
Lsi07g00833 Lsi-Chr7:9303739 Lsi07g00834 Lsi-Chr7:9325883 1.24E-71 tandem
Lsi07g00834 Lsi-Chr7:9325883 Lsi07g00835 Lsi-Chr7:9331765 1.64E-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00834 K00799 - csv:101217848 407.142