Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00838 ATGGCAGAGGAAGTGAAGCTGTTGGATTTCTGGCCCAGCATGTTTGGTATGCGAGTTAGAGTAGCCCTTGCAGAGAAGGGTGTGGCTTATGAGTATTTGGAAGAAGATCTGAAAAATAAGAGTCCTTTGCTTCTTCAAATGAACCCAATTAACGAGAAGGTCCCTGTTCTTATTCATAATGGAAAACCCATTTGTGAATCTTCAATAATTGTTGAGTATATTGATGAAGTTTGGAAGGATAAATCTCCTTTGTTGCCGTCTGATCCTTATCAAAGAGCTCAGGCCAGATTTTGGGCGGATTTCGTCGATAAGAAGCAATTGGAAGAAGTTCTTGGAGATAAGGCTTACTTTGGAGGTGAAAGTTTGGGATTTGTTGACATTGTTTTGATTGGATTCTACAGTTGGTTTTATGCCCTTGAGACCCTTGGGAACTTCAGCATTGAGTCTGAGTGTCCAAAGATAGTAGGTTGGGGGAAGAGATGCTTGCAAAAAGAGAGTGTTTCTAAGTCCCTACCTGACCCAAAAAAGGTCTATTGTGACTATGTGGTTCCATGCAGAAACCTTTGGGGCTTTGACCAAACAAACTGA 588 41.5 MAEEVKLLDFWPSMFGMRVRVALAEKGVAYEYLEEDLKNKSPLLLQMNPINEKVPVLIHNGKPICESSIIVEYIDEVWKDKSPLLPSDPYQRAQARFWADFVDKKQLEEVLGDKAYFGGESLGFVDIVLIGFYSWFYALETLGNFSIESECPKIVGWGKRCLQKESVSKSLPDPKKVYCDYVVPCRNLWGFDQTN 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9361646 9363714 - Lsi07G008380.1 Lsi07g00838 667260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00838 195 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 22 191 IPR010987 -
Lsi07g00838 195 SFLD Main (cytGST) 2 105 - -
Lsi07g00838 195 Pfam Glutathione S-transferase, C-terminal domain 106 157 - -
Lsi07g00838 195 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 105 178 - -
Lsi07g00838 195 CDD GST_N_Tau 5 78 - -
Lsi07g00838 195 SUPERFAMILY GST C-terminal domain-like 76 178 IPR036282 -
Lsi07g00838 195 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Lsi07g00838 195 Gene3D - 108 191 - -
Lsi07g00838 195 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 106 IPR045073 -
Lsi07g00838 195 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 105 178 IPR045073 -
Lsi07g00838 195 SFLD Main.3: Omega- and Tau-like 2 105 IPR045073 -
Lsi07g00838 195 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 106 - -
Lsi07g00838 195 CDD GST_C_Tau 89 178 IPR045074 GO:0004364|GO:0006749
Lsi07g00838 195 Gene3D - 85 107 - -
Lsi07g00838 195 Gene3D Glutaredoxin 1 84 - -
Lsi07g00838 195 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Lsi07g00838 195 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00838 Lsi-Chr7:9361646 Lsi07g00840 Lsi-Chr7:9392594 4.17E-113 dispersed
Lsi07g00837 Lsi-Chr7:9342227 Lsi07g00838 Lsi-Chr7:9361646 1.26E-65 tandem
Lsi07g00838 Lsi-Chr7:9361646 Lsi07g00839 Lsi-Chr7:9389835 4.57E-69 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00838 K00799 - csv:101218562 306.219