Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00839 ATGAACCCAATTCATAAGAAGATCCCTGTTCTTGTTCATAATGGAAAACCCATTTGTGAATCTTCAATAATCGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCTCCTAATTTGTTGCCGCTTGATCCTTATGAGAGATCTCAGGCCAGATTTTGGGTGGATTTCATCGACAAGAAGCTTTATGAAGCTGCAAAGAAGGTATGGGCAGGGAAAGGAGAGGAGCATGAGGCAGGGAAGAAGGAGGTGATAGGAATATTGAAGCAACTAGAAGAAGTTCTTGGGGAGAAGGCTTACTTTGGAATTGATTGTTTGGGATTTGTAGACATTGGTTTAATTGGATACTACACTTGGTTTTATACATATGAGACCATTGGGAACTTCAACATTGAGTCTGAGTGTCCAAAGGTAATGGATTGGGTGAAGAGATGCTTGCAAAATGAGAGTGTGGCTAAGTCCCTGGCTGACCCCAAGGATGTCTATGAATTTGTGGTTCAATGGAGGAAAAGTTTTGGCCTTTGA 522 40.8 MNPIHKKIPVLVHNGKPICESSIIVEYIDEVWKDKAPNLLPLDPYERSQARFWVDFIDKKLYEAAKKVWAGKGEEHEAGKKEVIGILKQLEEVLGEKAYFGIDCLGFVDIGLIGYYTWFYTYETIGNFNIESECPKVMDWVKRCLQNESVAKSLADPKDVYEFVVQWRKSFGL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9389835 9390674 - Lsi07G008390.1 Lsi07g00839 667261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00839 173 Pfam Glutathione S-transferase, N-terminal domain 2 30 IPR004045 -
Lsi07g00839 173 SUPERFAMILY GST C-terminal domain-like 30 170 IPR036282 -
Lsi07g00839 173 SFLD Main (cytGST) 1 171 - -
Lsi07g00839 173 Pfam Glutathione S-transferase, C-terminal domain 77 143 - -
Lsi07g00839 173 Gene3D Glutaredoxin 1 41 - -
Lsi07g00839 173 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 36 IPR004045 -
Lsi07g00839 173 SFLD Main.3: Omega- and Tau-like 1 171 IPR045073 -
Lsi07g00839 173 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 165 IPR045073 -
Lsi07g00839 173 SUPERFAMILY Thioredoxin-like 1 34 IPR036249 -
Lsi07g00839 173 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 1 165 - -
Lsi07g00839 173 Gene3D - 43 173 - -
Lsi07g00839 173 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 43 171 IPR010987 -
Lsi07g00839 173 CDD GST_C_Tau 44 164 IPR045074 GO:0004364|GO:0006749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00839 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101218323 304.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00839 Lsi-Chr7:9389835 Lsi09g00896 Lsi-Chr9:10669069 7.00E-64 dispersed
Lsi07g00838 Lsi-Chr7:9361646 Lsi07g00839 Lsi-Chr7:9389835 4.57E-69 tandem
Lsi07g00839 Lsi-Chr7:9389835 Lsi07g00840 Lsi-Chr7:9392594 2.34E-98 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02381 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 2.3e-64 242.3
Lsi02g02379 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 2.0e-63 239.2
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 3.2e-66 248.4
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 4.3e-63 238.0
Lsi02g02380 . 1 238 Glutathione S-transferase Gene Family AT2G02930 50.2 1.8e-56 216.1
Lsi02g02379 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 3.5e-59 225.3
Lsi02g02381 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 6.0e-59 224.6
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 2.5e-63 238.8
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.1e-62 235.7
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.7 1.0e-64 243.4
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 1.9e-63 239.2
Lsi02g02379 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.1e-67 252.7
Lsi02g02381 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.7 7.5e-65 244.2
Lsi02g02378 . 1 196 Glutathione S-transferase Gene Family AT3G62760 53.3 3.1e-64 241.9
Lsi02g02381 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 4.7e-48 188.3
Lsi01g01489 . 2 220 Glutathione S-transferase Gene Family AT3G09270 50.9 1.0e-62 236.9
Lsi01g01490 . 3 215 Glutathione S-transferase Gene Family AT3G09270 53.5 4.3e-61 231.5
Lsi01g01498 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.5 1.8e-59 226.1
Lsi01g01487 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.7 3.5e-55 211.8
Lsi10g01022 . 1 198 Glutathione S-transferase Gene Family AT3G09270 50.8 1.7e-54 209.5
Lsi01g01486 . 3 209 Glutathione S-transferase Gene Family AT3G09270 50.2 6.2e-52 201.1
Lsi07g00840 . 1 215 Glutathione S-transferase Gene Family AT1G78380 69.8 7.6e-87 317.0
Lsi07g00834 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.7 4.9e-86 314.3
Lsi07g00835 . 1 215 Glutathione S-transferase Gene Family AT1G78380 67.0 1.4e-80 296.2
Lsi09g00896 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 7.9e-68 253.8
Lsi07g00839 . 1 171 Glutathione S-transferase Gene Family AT1G78380 67.8 1.3e-62 236.5
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G78380 58.0 5.0e-62 234.6
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G78380 52.1 1.7e-54 209.5
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78380 80.0 1.5e-45 179.9
Lsi07g00840 . 7 215 Glutathione S-transferase Gene Family AT1G78370 64.6 8.4e-78 287.0
Lsi07g00834 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.3 7.3e-74 273.9
Lsi07g00835 . 7 215 Glutathione S-transferase Gene Family AT1G78370 61.7 1.1e-72 270.0
Lsi09g00896 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.2 5.3e-64 241.1
Lsi07g00838 . 7 177 Glutathione S-transferase Gene Family AT1G78370 57.3 3.0e-59 225.3
Lsi07g00839 . 2 170 Glutathione S-transferase Gene Family AT1G78370 58.0 1.3e-54 209.9
Lsi07g00833 . 8 196 Glutathione S-transferase Gene Family AT1G78370 51.3 1.8e-51 199.5
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78370 72.4 1.6e-41 166.4
Lsi07g00840 . 1 215 Glutathione S-transferase Gene Family AT1G78340 63.7 2.6e-79 292.0
Lsi07g00834 . 1 217 Glutathione S-transferase Gene Family AT1G78340 62.2 9.9e-79 290.0
Lsi07g00835 . 1 215 Glutathione S-transferase Gene Family AT1G78340 61.9 9.6e-74 273.5
Lsi09g00896 . 4 219 Glutathione S-transferase Gene Family AT1G78340 53.2 5.8e-63 237.7
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G78340 54.1 5.7e-58 221.1
Lsi07g00839 . 1 171 Glutathione S-transferase Gene Family AT1G78340 59.6 4.8e-57 218.0
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G78340 51.6 5.9e-55 211.1
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78340 78.1 3.8e-46 181.8
Lsi07g00840 . 1 217 Glutathione S-transferase Gene Family AT1G78320 51.6 1.7e-58 222.6
Lsi07g00835 . 1 220 Glutathione S-transferase Gene Family AT1G78320 50.7 1.8e-55 212.6
Lsi07g00840 . 1 219 Glutathione S-transferase Gene Family AT1G17180 69.4 3.7e-89 324.7
Lsi07g00834 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.5 5.2e-83 304.3
Lsi07g00835 . 1 220 Glutathione S-transferase Gene Family AT1G17180 65.5 1.3e-81 299.7
Lsi09g00896 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.2 3.6e-68 255.0
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G17180 55.1 1.7e-62 236.1
Lsi07g00839 . 1 173 Glutathione S-transferase Gene Family AT1G17180 61.8 2.2e-62 235.7
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G17180 52.6 2.4e-56 215.7
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G17180 74.3 2.1e-44 176.0
Lsi07g00840 . 3 218 Glutathione S-transferase Gene Family AT1G17190 59.7 4.4e-74 274.6
Lsi07g00834 . 3 218 Glutathione S-transferase Gene Family AT1G17190 56.5 1.8e-72 269.2
Lsi07g00835 . 3 218 Glutathione S-transferase Gene Family AT1G17190 55.6 5.2e-67 251.1
Lsi07g00839 . 1 172 Glutathione S-transferase Gene Family AT1G17190 58.1 7.0e-56 214.2
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G17190 52.1 6.1e-52 201.1
Lsi07g00837 . 3 105 Glutathione S-transferase Gene Family AT1G17190 69.9 6.3e-41 164.5
Lsi07g00840 . 3 215 Glutathione S-transferase Gene Family AT3G43800 59.9 3.8e-73 271.6
Lsi07g00834 . 3 213 Glutathione S-transferase Gene Family AT3G43800 58.6 1.2e-71 266.5
Lsi07g00835 . 3 215 Glutathione S-transferase Gene Family AT3G43800 56.0 2.3e-70 262.3
Lsi07g00839 . 2 166 Glutathione S-transferase Gene Family AT3G43800 56.3 4.7e-55 211.5
Lsi07g00840 . 4 219 Glutathione S-transferase Gene Family AT1G53680 56.2 1.3e-70 263.1
Lsi09g00896 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.1e-64 243.4
Lsi07g00834 . 4 219 Glutathione S-transferase Gene Family AT1G53680 54.6 1.4e-64 243.0
Lsi07g00835 . 4 220 Glutathione S-transferase Gene Family AT1G53680 54.8 1.9e-64 242.7
Lsi07g00833 . 6 196 Glutathione S-transferase Gene Family AT1G53680 53.1 7.4e-53 204.1
Lsi07g00839 . 2 173 Glutathione S-transferase Gene Family AT1G53680 50.6 2.1e-47 186.0
Lsi10g00753 . 55 214 Glutathione S-transferase Gene Family AT2G02390 60.8 3.7e-53 204.9
Lsi09g00644 . 1 141 Glutathione S-transferase Gene Family AT2G02390 63.8 2.6e-46 182.2
Lsi10g00753 . 14 209 Glutathione S-transferase Gene Family AT2G02380 59.4 3.4e-66 248.4
Lsi09g00644 . 1 141 Glutathione S-transferase Gene Family AT2G02380 57.4 1.1e-43 173.7
Lsi07g00892 . 1 230 Glutathione S-transferase Gene Family AT5G41210 68.8 1.7e-90 329.3
Lsi07g00892 . 1 230 Glutathione S-transferase Gene Family AT5G41240 65.8 7.8e-86 315.1
Lsi03g02067 . 7 226 Glutathione S-transferase Gene Family AT5G02780 67.1 1.1e-83 306.6
Lsi03g02066 . 13 232 Glutathione S-transferase Gene Family AT5G02780 67.6 2.1e-82 302.4
Lsi04g00829 . 36 272 Glutathione S-transferase Gene Family AT5G02780 60.7 4.5e-77 284.6
Lsi03g02065 . 14 232 Glutathione S-transferase Gene Family AT5G02780 63.5 2.5e-75 278.9
Lsi04g00829 . 34 270 Glutathione S-transferase Gene Family AT3G55040 63.9 3.4e-82 302.0
Lsi03g02067 . 1 227 Glutathione S-transferase Gene Family AT3G55040 60.3 2.7e-79 292.4
Lsi03g02066 . 3 237 Glutathione S-transferase Gene Family AT3G55040 56.8 1.6e-76 283.1
Lsi03g02065 . 4 236 Glutathione S-transferase Gene Family AT3G55040 55.3 4.1e-72 268.5
Lsi03g02067 . 7 226 Glutathione S-transferase Gene Family AT5G02790 70.0 3.5e-90 328.2
Lsi03g02066 . 7 232 Glutathione S-transferase Gene Family AT5G02790 68.3 1.1e-88 323.2
Lsi03g02065 . 8 232 Glutathione S-transferase Gene Family AT5G02790 64.8 1.2e-82 303.1
Lsi04g00829 . 28 272 Glutathione S-transferase Gene Family AT5G02790 57.7 5.3e-78 287.7
Lsi04g00854 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.3 1.1e-79 293.1
Lsi05g00364 . 65 272 Glutathione S-transferase Gene Family AT1G19570 59.3 1.4e-72 269.6
Lsi04g00854 . 1 211 Glutathione S-transferase Gene Family AT1G75270 68.4 2.6e-84 308.5
Lsi05g00364 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 5.5e-74 274.2
Lsi05g00364 . 54 274 Glutathione S-transferase Gene Family AT5G16710 76.5 3.4e-102 368.2
Lsi04g00854 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 7.4e-73 270.8
Lsi04g01839 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.8 5.4e-111 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00839 Lsi_Chr07 FPKM 44.859695 44.866806 39.692039 38.592003 38.197659 33.612457 37.480881 38.897121 39.694317 35.920883