Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00839 ATGAACCCAATTCATAAGAAGATCCCTGTTCTTGTTCATAATGGAAAACCCATTTGTGAATCTTCAATAATCGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCTCCTAATTTGTTGCCGCTTGATCCTTATGAGAGATCTCAGGCCAGATTTTGGGTGGATTTCATCGACAAGAAGCTTTATGAAGCTGCAAAGAAGGTATGGGCAGGGAAAGGAGAGGAGCATGAGGCAGGGAAGAAGGAGGTGATAGGAATATTGAAGCAACTAGAAGAAGTTCTTGGGGAGAAGGCTTACTTTGGAATTGATTGTTTGGGATTTGTAGACATTGGTTTAATTGGATACTACACTTGGTTTTATACATATGAGACCATTGGGAACTTCAACATTGAGTCTGAGTGTCCAAAGGTAATGGATTGGGTGAAGAGATGCTTGCAAAATGAGAGTGTGGCTAAGTCCCTGGCTGACCCCAAGGATGTCTATGAATTTGTGGTTCAATGGAGGAAAAGTTTTGGCCTTTGA 522 40.8 MNPIHKKIPVLVHNGKPICESSIIVEYIDEVWKDKAPNLLPLDPYERSQARFWVDFIDKKLYEAAKKVWAGKGEEHEAGKKEVIGILKQLEEVLGEKAYFGIDCLGFVDIGLIGYYTWFYTYETIGNFNIESECPKVMDWVKRCLQNESVAKSLADPKDVYEFVVQWRKSFGL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9389835 9390674 - Lsi07G008390.1 Lsi07g00839 667261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00839 173 Pfam Glutathione S-transferase, N-terminal domain 2 30 IPR004045 -
Lsi07g00839 173 SUPERFAMILY GST C-terminal domain-like 30 170 IPR036282 -
Lsi07g00839 173 SFLD Main (cytGST) 1 171 - -
Lsi07g00839 173 Pfam Glutathione S-transferase, C-terminal domain 77 143 - -
Lsi07g00839 173 Gene3D Glutaredoxin 1 41 - -
Lsi07g00839 173 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 36 IPR004045 -
Lsi07g00839 173 SFLD Main.3: Omega- and Tau-like 1 171 IPR045073 -
Lsi07g00839 173 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 165 IPR045073 -
Lsi07g00839 173 SUPERFAMILY Thioredoxin-like 1 34 IPR036249 -
Lsi07g00839 173 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 1 165 - -
Lsi07g00839 173 Gene3D - 43 173 - -
Lsi07g00839 173 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 43 171 IPR010987 -
Lsi07g00839 173 CDD GST_C_Tau 44 164 IPR045074 GO:0004364|GO:0006749
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00839 Lsi-Chr7:9389835 Lsi09g00896 Lsi-Chr9:10669069 7.00E-64 dispersed
Lsi07g00838 Lsi-Chr7:9361646 Lsi07g00839 Lsi-Chr7:9389835 4.57E-69 tandem
Lsi07g00839 Lsi-Chr7:9389835 Lsi07g00840 Lsi-Chr7:9392594 2.34E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00839 K00799 - csv:101218323 304.679