Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00840 ATGGCAGAGGAAGTGAAGCTGTTGGATTTCTGGCCCAGCATGTTTGGGATGCGAGTGAGAATAGCCCTTGCAGAAAAAGGTGTGGCTTATGAGTATGTGGAAGAAGATCTGAGGAATAAAAGCTCTTTGCTTCTTCAAATGAACCCAATTCATAAGAAGATCCCTGTTCTTGTTCATAATGGAAAACCCATTTGTGAATCTTCAATAATTGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCTCCTTTGTTGCCGTCTGATCCTTATCAGAGATCTCAGGCCAGATTTTGGGTGGATTTCATCGATAAGAAGGTTTATGATGCTACAAGGAAGATATGGGCCAGCAAGGGAGATCAGGAGCGTGAGACAGGAAAGAAGGAAGTGATAGAAATTTTGAAGCAATTGGAAGAAGTTCTTGGAGATAAGGCTTACTTTGGAGGTGAAAGTTTGGGAGTTGTAGACATTGCTTTGATTGGATTCTACAGTTGGTTTTATACATTTGAGACAATTGGGAACTTCAACATTGAGGCTGAGTGTCCAAAGATAATAAGTTGGGGGAAGAGATGCTTAGAAAATGAGAGTGTTTCTAAGTCCCTACCTGACCCAAAAAAGATCTATGACTTTGTGGTTCAAATGCAGAAAGCTTTGGGGGTTTGA 660 40.45 MAEEVKLLDFWPSMFGMRVRIALAEKGVAYEYVEEDLRNKSSLLLQMNPIHKKIPVLVHNGKPICESSIIVEYIDEVWKDKAPLLPSDPYQRSQARFWVDFIDKKVYDATRKIWASKGDQERETGKKEVIEILKQLEEVLGDKAYFGGESLGVVDIALIGFYSWFYTFETIGNFNIEAECPKIISWGKRCLENESVSKSLPDPKKIYDFVVQMQKALGV 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9392594 9395686 - Lsi07G008400.1 Lsi07g00840 667262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00840 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Lsi07g00840 219 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
Lsi07g00840 219 CDD GST_N_Tau 5 78 - -
Lsi07g00840 219 Gene3D Glutaredoxin 1 87 - -
Lsi07g00840 219 Pfam Glutathione S-transferase, C-terminal domain 111 192 IPR004046 -
Lsi07g00840 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 -
Lsi07g00840 219 Gene3D - 88 219 - -
Lsi07g00840 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Lsi07g00840 219 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Lsi07g00840 219 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 211 - -
Lsi07g00840 219 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Lsi07g00840 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Lsi07g00840 219 SFLD Main (cytGST) 2 217 - -
Lsi07g00840 219 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00833 Lsi-Chr7:9303739 Lsi07g00840 Lsi-Chr7:9392594 3.24E-79 dispersed
Lsi07g00834 Lsi-Chr7:9325883 Lsi07g00840 Lsi-Chr7:9392594 2.89E-131 dispersed
Lsi07g00835 Lsi-Chr7:9331765 Lsi07g00840 Lsi-Chr7:9392594 4.48E-132 dispersed
Lsi07g00837 Lsi-Chr7:9342227 Lsi07g00840 Lsi-Chr7:9392594 1.08E-70 dispersed
Lsi07g00838 Lsi-Chr7:9361646 Lsi07g00840 Lsi-Chr7:9392594 4.17E-113 dispersed
Lsi07g00840 Lsi-Chr7:9392594 Lsi09g00896 Lsi-Chr9:10669069 1.67E-85 dispersed
Lsi07g00839 Lsi-Chr7:9389835 Lsi07g00840 Lsi-Chr7:9392594 2.34E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00840 K00799 - csv:101218562 387.497