Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00844 | ATGTCGAGCAGCAACATGGGGCTGCGTTTTATGTCATACCCACAGAAGAATCTGCTGATGAAGTTCTCATCTCTGTCCCCAGTAACTTCAATTGCCAGTATCAAAACTGTCAAAGGGTGCAGTTGTAGTGTTGGTTTTCAATTCAACTTTGATGATTTTAGTAGCAAAAAGAGGCATTTGGAAAGAGTTTACTCCACCAATTCAAATGGGATATCTAGCAATAAGCAGTTTATTAGTGTTGATCCACAGCTTTATGAGTATATTCTCTCCAATGTTCGAGAGCCTGAGATCCTGGGCAAACTTCGTGAGGAGACTGCCTCAATGCGTGGTAGCAAAATGCAGGTATCCCCCGATCAAGCACAACTTCTTGCAATGCTTGTTCAGATTCTCGGTGCTAAGAGGTGCATCGAAGTGGGTGTTTACACTGGATATTCGTCTTTGGCCGTAGCACTAGTCCTGCCAGAATCAGGGCGTTTAGTTGCCTGTGAAAGAGATCTCAAATATCTTGAGGTGGACGTGAGACATGGGCTTGCAGCAGATACACTCAAATCACTTATTTCAAAAGGTGAAGCTTGCAGCTATGATTTTGCCTTCATCGATGCCGAGAAGAGGATGAATGAGGAATACTTCGAACTACTACTGCAATTGGTGAGGGTTGGAGGCTTAATTGTGATTGACAATGTCCTTTGGTACGGAAAAGTAGCTGACCCGATGATTGATGACAAGAAGACCGATAGCATCAGGAGATTGAATAAAAAGATAATGGAAGACAATCGAGTCGGGATGAGTACCTATTGGAGATGGCATGACAATTTGCCAAAAGAGATGAATGGTGTGGTTGAAATGAGTAGAAATGATGTTTCTTTAGTAGAATAG | 876 | 42.58 | MSSSNMGLRFMSYPQKNLLMKFSSLSPVTSIASIKTVKGCSCSVGFQFNFDDFSSKKRHLERVYSTNSNGISSNKQFISVDPQLYEYILSNVREPEILGKLREETASMRGSKMQVSPDQAQLLAMLVQILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACERDLKYLEVDVRHGLAADTLKSLISKGEACSYDFAFIDAEKRMNEEYFELLLQLVRVGGLIVIDNVLWYGKVADPMIDDKKTDSIRRLNKKIMEDNRVGMSTYWRWHDNLPKEMNGVVEMSRNDVSLVE | 291 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9424853 | 9429441 | - | Lsi07G008440.1 | Lsi07g00844 | 667266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00844 | 291 | Gene3D | Vaccinia Virus protein VP39 | 64 | 266 | IPR029063 | - | |
| Lsi07g00844 | 291 | PANTHER | O-METHYLTRANSFERASE-RELATED | 71 | 264 | - | - | |
| Lsi07g00844 | 291 | Pfam | O-methyltransferase | 92 | 263 | IPR002935 | GO:0008171 | |
| Lsi07g00844 | 291 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 85 | 263 | IPR029063 | - | |
| Lsi07g00844 | 291 | PANTHER | CATECHOL O-METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1 | 71 | 264 | - | - | |
| Lsi07g00844 | 291 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 74 | 285 | IPR002935 | GO:0008171 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00677 | Lsi-Chr4:6190613 | Lsi07g00844 | Lsi-Chr7:9424853 | 5.47E-09 | dispersed | |
| Lsi05g00223 | Lsi-Chr5:2997201 | Lsi07g00844 | Lsi-Chr7:9424853 | 2.37E-17 | dispersed | |
| Lsi07g00844 | Lsi-Chr7:9424853 | Lsi03g00494 | Lsi-Chr3:5668382 | 3.92E-30 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00844 | - | - | cmo:103492978 | 486.108 |