Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00868 ATGTTGAGGGTCAGGCGAGTTGTCCCGTGCGCATATAAGATTCTTGAAGTTGTTGGAAGAGGAAGTTACGGAGTTGTTTGTTCTGCTATTGACATGCAAACTGGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGACATCAAGCGTATTATGTTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTGTATCATAGAGATCTGAAGCCGAAGAATATATTGGCAAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGACACCCCAACTACTGTATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGTTGTGTGGATCATTCTGTTCCAAGTATACTCCTGCCATAGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGTGTTGCCCATCAACTGGACTTGATTACTGATCTTCTTGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGACAAGGCCAGGAAATATTTGACAGAAATGAGAAAGAAATCTGCAGTGCCATTTTCGCAAAGATTTCCCAATGCAGATCCTACAGCCGTCCGCTTATTGCAAAGACTATTAGCATTTGATCCAAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAACCAATCTCAAGAGCGGAATTTGAGTTTGAGAGACGGAAATTAACAAAGGATGATGTGAGGGAATTGTTATACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTATTTGAATGGAACTGAGACTACAAAGCTCCTCTATCCTAGCGTTACAGGTCATTTTAAAAGCCAATTCACCTTCCACAAGGAGAATAATGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGAAAACACTTCTCCCTGCCACGGTCCACTGTTTGCACAAATTTGGCTTCACCTGATCGTGAACCCATTCGGCAAAATCCCAAAGTCTCTAATAATAGTATGGGATTACCTGATAGAAAATTTGGTAATCCATCAAAGGCTCATCCTCCACCCAAAGTGCCTACTGGTATGAAAATTTTTCTCATTGTTTTTCCCCTCAAAGTTTCTTTCTTTTCAATGGACAACTTCTCTACTGATAAGAAAATAAGAGAGCCCCCTATATTTCTGGGTCTGACTAGGAACGATGTCTCTAAAACAGGCATTACTGGTGGTCCTCAACCATTCTTGGAACTGAGCAAGGAGTCCAGAAGCCCAATCTCGTCGACAAGTTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTTCTCCTCAATAATATTCTTGTTTGCAAAGTATTATGTTTTAGTAGGACCGTACAGCTCTTAAGTAATGCAACTAACGGAAATGCCCTGCAGATGGTTGGTAAGGAGAACCCAGCCTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTTTAGTATTCCTGGTGTCAAGAGCAACGGCCGGATTGGTTGGGCTAGAGGAACTCACTGTGGAGCATCGGCGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACATGATGATGTCTTAGACGATAGTGATATGAGGAGAGGTATGCCCCTTTTACGTGTGCAAACTTTGGAAATTCTTTTTGATGCAATGAATTCCTGTGTCTGTATGTATCATCAGTTTGAATGTTTGAATGATGATGATATTATGGTTGGTTCATCAGTTGTTTCCCATGCCAGTGCTTCTTCATCATTTGGAGACGAGTCACCACCGATGAGACTAACAAGTTTCTCTATGTTGCATTTTCTCATACATCTGCAATGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCAGTGCTGGCTGGAGATTTCATGTTTGCACAGTCATCGTGGTGTCTTGCTAATCTTGAAAACCTCGAAGTCATTAAGCTTATCAGTCAGGTAAATTTGGTTCCCATTTACTTAGTAAGTCTCTTATATAAGTTTCAATTAGTTCTATTGCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTGGAAGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCTAGTACCAAAGGTGCTGCGATCTTTAGTGGGGTTGATCGTGATACGACGGAGAAGATGTATGAGTATGGAAGGAATCTCGGTCTCTCATTCCAAATTGTCGATGACATATTGGATTTTACACAATCAACAAAGCAGCTTGGGAAGCCGGCAGGAAGTGATCTGGCTAAAGGGAATCTTACAGCCCCAGTTATATTTGCTCTGGAGAGAGAGCCGAAATTGAAAGAAATTATTGAATCAGAATTCAATGAGCCTGGGTCTCTCGAAGAAGCCATCCACATAGTCAAGAGCAGTGGTGGCATTGAAAGAGCGCAGGAATTAGCTAAACAAAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACTAAGTGCCTTTCGGTTAGCGCTCGAGGATATGGTAACGTTTAATCTAGAACGGATCGATTAG 2877 41.4 MLRVRRVVPCAYKILEVVGRGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNDKARKYLTEMRKKSAVPFSQRFPNADPTAVRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRAEFEFERRKLTKDDVRELLYREILEYHPQIREDYLNGTETTKLLYPSVTGHFKSQFTFHKENNGKSAPVLPLERKHFSLPRSTVCTNLASPDREPIRQNPKVSNNSMGLPDRKFGNPSKAHPPPKVPTGMKIFLIVFPLKVSFFSMDNFSTDKKIREPPIFLGLTRNDVSKTGITGGPQPFLELSKESRSPISSTSLFEVVADDLQKLNQNLLLNNILVCKVLCFSRTVQLLSNATNGNALQMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGMPLLRVQTLEILFDAMNSCVCMYHQFECLNDDDIMVGSSVVSHASASSSFGDESPPMRLTSFSMLHFLIHLQWKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVNLVPIYLVSLLYKFQLVLLQVIKDFASGEIKQASSLFDCEVELEEYLIKSYYKTASLIAASTKGAAIFSGVDRDTTEKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPKLKEIIESEFNEPGSLEEAIHIVKSSGGIERAQELAKQKADLAIQNLQCLPLSAFRLALEDMVTFNLERID 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9830816 9841646 - Lsi07G008680.1 Lsi07g00868 667290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00868 958 SUPERFAMILY Terpenoid synthases 562 644 IPR008949 -
Lsi07g00868 958 ProSitePatterns MAP kinase signature. 47 150 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi07g00868 958 Pfam Polyprenyl synthetase 715 909 IPR000092 GO:0008299
Lsi07g00868 958 Pfam Polyprenyl synthetase 571 647 IPR000092 GO:0008299
Lsi07g00868 958 CDD Trans_IPPS_HT 567 956 IPR000092 GO:0008299
Lsi07g00868 958 ProSiteProfiles Protein kinase domain profile. 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00868 958 SUPERFAMILY Terpenoid synthases 714 956 IPR008949 -
Lsi07g00868 958 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lsi07g00868 958 ProSitePatterns Polyprenyl synthases signature 2. 842 854 IPR033749 -
Lsi07g00868 958 Gene3D Transferase(Phosphotransferase) domain 1 98 326 - -
Lsi07g00868 958 ProSitePatterns Polyprenyl synthases signature 1. 626 640 IPR033749 -
Lsi07g00868 958 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 430 - -
Lsi07g00868 958 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 12 430 - -
Lsi07g00868 958 MobiDBLite consensus disorder prediction 403 431 - -
Lsi07g00868 958 Gene3D Farnesyl Diphosphate Synthase 547 957 IPR008949 -
Lsi07g00868 958 SMART serkin_6 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00868 958 MobiDBLite consensus disorder prediction 403 442 - -
Lsi07g00868 958 CDD STKc_TDY_MAPK 12 348 - -
Lsi07g00868 958 Gene3D Phosphorylase Kinase; domain 1 27 349 - -
Lsi07g00868 958 Pfam Protein kinase domain 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00868 958 SUPERFAMILY Protein kinase-like (PK-like) 7 307 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00123 Lsi-Chr1:1270364 Lsi07g00868 Lsi-Chr7:9830816 3.11E-12 dispersed
Lsi07g00868 Lsi-Chr7:9830816 Lsi11g01637 Lsi-Chr11:24708069 0 dispersed
Lsi09g01590 Lsi-Chr9:24025453 Lsi07g00868 Lsi-Chr7:9830816 2.08E-109 dispersed
Lsi07g00868 Lsi-Chr7:9830816 Lsi10g01541 Lsi-Chr10:19818071 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83785 PF00069 Pkinase 5.20E-64 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00868 - K04371 csv:101213897 859.751