Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00871 ATGCAGTTGAATTCTGTTCGTGTTGCTGTTTACTGCTTTTCGCGTTTGGCGGCTCAGGAAACCACGACTAACACAAGCCTCTGTTGTTATCCTGCTTTCCGTGAGAGAGGAGGCAATTTCTTCAAGCTCTCCCTCAGGTCTGGAAACAAACTTGGACAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTCGGAAATGGAACTCTGGCTGCCATAAAGGTACTATCCATGGATTCAAGCCAAGGGATGCGGGAGTTTTTGGCAGAAATCAATGTGATCTCAGTTATAAACCACAATAACCTGGTTAAGTTGCATGGTTGCTGTGTGGAAGGGCAGCACCGGATTTTGGTCTATCCTTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTGGTAGAGGACATGGGAATATTCAATTCAATTGGCAAACGAGGTGCAAAATATGCATTGGCATCGCGCAGGGGCTAGCGTTCCTCCATGAGGAAGTTGAGCCGCATGTTATACACAGGGACATCAAGGCAAGCAATATCCTGCTTGATAAAGATTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACTTGACCCATGTTAGTACACGTGTTGCCGGGACAGTAGGTTATCTTGCACCTGAATTTGCCATACGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTTTTGGAGATTGTTTGTGGGAGGTACAACATAAGTAGACGGTTACCTGCTGAAGAACCATATCTTCTTGAAATGGTGTGGGAGCATCATGAGAAAGGGCAATTGCTGGAATTGGTAGACCTATCATTACATGGAGACTTTGGGACTGAGGAGGCCTGCAGATTCTTAAAAATTGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGTCCATCTATGGCGACCGTCGTCAAGATGCTAACAGGTGACATTGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTATGCAAGAAGGGCGGGTCAACAACTGAAGACTCAGGAAAGCCAATTGATTCAACTTCAACATCAGGATACATGGACACCTCACATGCTACGATGACCTTCAATTCGATATTTGATCGTAGTAACTAA 1158 44.3 MQLNSVRVAVYCFSRLAAQETTTNTSLCCYPAFRERGGNFFKLSLRSGNKLGQGGFGSVYKGRLGNGTLAAIKVLSMDSSQGMREFLAEINVISVINHNNLVKLHGCCVEGQHRILVYPYLENSSLDKMLFGGRGHGNIQFNWQTRCKICIGIAQGLAFLHEEVEPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHLTHVSTRVAGTVGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNISRRLPAEEPYLLEMVWEHHEKGQLLELVDLSLHGDFGTEEACRFLKIGLLCTQDMPKLRPSMATVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLCKKGGSTTEDSGKPIDSTSTSGYMDTSHATMTFNSIFDRSN 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9878677 9884495 - Lsi07G008710.1 Lsi07g00871 667293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00871 385 SMART serkin_6 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00871 385 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Lsi07g00871 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 47 369 - -
Lsi07g00871 385 SUPERFAMILY Protein kinase-like (PK-like) 44 317 IPR011009 -
Lsi07g00871 385 ProSiteProfiles Protein kinase domain profile. 45 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00871 385 Gene3D Phosphorylase Kinase; domain 1 51 121 - -
Lsi07g00871 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lsi07g00871 385 Pfam Protein kinase domain 47 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00871 385 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Lsi07g00871 385 CDD STKc_IRAK 51 319 - -
Lsi07g00871 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 47 369 - -
Lsi07g00871 385 MobiDBLite consensus disorder prediction 348 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01353 Lsi-Chr1:11713102 Lsi07g00871 Lsi-Chr7:9878677 5.64E-112 dispersed
Lsi07g00826 Lsi-Chr7:9192474 Lsi07g00871 Lsi-Chr7:9878677 3.89E-149 dispersed
Lsi07g00871 Lsi-Chr7:9878677 Lsi07g00293 Lsi-Chr7:3155917 9.63E-99 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83786 PF00069 Pkinase 7.00E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00871 - - bhj:120074245 659.448