Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00877 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCGAAGTCTTCCTCTAGAGATCCCATTGCTCTTGGGGGAATTCTTCCGCTGTCCCCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCGGAGCTTCTTCGGGAGATCATTCAGCGGGTCGAGGCTTCAGAAGACGCTTGGCCTAACCGCCAGAACGTTGTTTCCTGTGCTTGTGTTTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGAGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCGAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTCTCTTGCCCTTACACCAGCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCTCAAGGAAGCAATGCTTACGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACCATTTATGACAGCCAACCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAATTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATTAGAAGACACTGGAACCAGCAAACCTTGTGAGAACTCGAAGATGACGAAGTCCGATTCTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTTGTCGCTACTGTTGACCATAGCCAGCCGGGAGGTAAAGGGGACGAAGAAACAGTTCTACTGCAGTTTGGAAAGGTAGGCGATGATACGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCATGCGAATAG 1158 47.06 MSLRRSFLSRKFSSKSSSRDPIALGGILPLSPSDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDAWPNRQNVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLSLALTPAFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQLSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVLEDTGTSKPCENSKMTKSDSLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9959232 9963896 + Lsi07G008770.1 Lsi07g00877 667299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00877 385 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 48 385 - -
Lsi07g00877 385 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515
Lsi07g00877 385 Pfam F-box domain 56 102 IPR001810 GO:0005515
Lsi07g00877 385 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Lsi07g00877 385 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Lsi07g00877 385 Pfam Tub family 117 380 IPR000007 -
Lsi07g00877 385 Gene3D - 50 102 - -
Lsi07g00877 385 SUPERFAMILY Tubby C-terminal domain-like 107 385 IPR025659 -
Lsi07g00877 385 Gene3D Tubby Protein; Chain A 112 385 IPR025659 -
Lsi07g00877 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Lsi07g00877 385 PANTHER TUBBY-RELATED 48 385 - -
Lsi07g00877 385 MobiDBLite consensus disorder prediction 205 224 - -
Lsi07g00877 385 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00877 Lsi-Chr7:9959232 Lsi09g01396 Lsi-Chr9:21999286 4.32E-127 dispersed
Lsi07g00877 Lsi-Chr7:9959232 Lsi04g01686 Lsi-Chr4:24240314 1.40E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25651 PF01167 Tub 1.60E-100 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00877 K19600 - csv:101211968 669.077