Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00905 ATGAATAAGGATCAAGTTGTTGCAGCAATGGGAGATTATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGAGATATTGGTGGAGGGAAGAATAATAATATGAATAATAAAGGAAAAGTGGTGATGGGTAAAAGAAGAAGTGCAATAATGGCTCCAAGGATTGCTTTTCAGACAAGAAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCACCCATCCTAGGAGCTATTACCGGTGTACACATCACACATGTAACGTTAAGAAACAAATTCAAAGGCATTCAAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG 441 38.78 MNKDQVVAAMGDYYDNVVNIGGIKEGDIGGGKNNNMNNKGKVVMGKRRSAIMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10414641 10419447 + Lsi07G009050.1 Lsi07g00905 667327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00905 146 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00905 146 SUPERFAMILY WRKY DNA-binding domain 60 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g00905 146 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00905 146 Pfam WRKY DNA -binding domain 68 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00905 146 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 30 142 - -
Lsi07g00905 146 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 142 IPR044810 GO:0003700
Lsi07g00905 146 Gene3D WRKY domain 52 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00905 Lsi-Chr7:10414641 Lsi07g01483 Lsi-Chr7:21620276 4.96E-38 dispersed
Lsi07g00905 Lsi-Chr7:10414641 Lsi03g01124 Lsi-Chr3:21462995 2.67E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25654 PF03106 WRKY 6.00E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00905 - - cmo:103493140 221.861